2009 Winter Project Week:RegionalCorticalThicknessPipeline - Revision history

Mathieuc at 16:58, 9 January 2009

2009-01-09T16:58:34Z

Mathieuc at 16:57, 9 January 2009

2009-01-09T16:57:58Z

Mathieuc at 17:37, 21 December 2008

2008-12-21T17:37:33Z

Cvachet: New page: {| |Project Week Main Page ]] |Screenshot of the application |valign="c...

2008-12-12T21:52:22Z

New page: {| |thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page ]] |thumb|250px|Screenshot of the application |valign="c...

New page

{|
|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
|[[Image:Screenshot_Slicer.jpg|thumb|250px|Screenshot of the application]]
|valign="center"|[[Image:Schema_pipeline.jpg|thumb|600px|Pipeline description]]
|}

__NOTOC__

===Key Investigators===
* UNC: Cedric Mathieu, Clement Vachet, Martin Styner, Heather Cody Hazlett
* GE: Jim Miller

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<h1>Objective</h1>
We have developped an end-to-end application within Slicer3 allowing individual analysis of regional cortical thickness.
We are also developing an end-to-end application allowing group comparison.

Such a workflow applied to the young brain (2-4 years old) is our goal in order to start a longitudinal study of early brain development in [[DBP2:UNC|autism (UNC DBP)]].

See our [[DBP2:UNC:Cortical_Thickness_Roadmap| Roadmap]] for more details.
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<h1>Approach, Plan</h1>

Our plan for the project week is to improve the integration of the regional cortical thickness module within Slicer:
*Specific directory within Slicer3 tree to store external modules available on NITRC
*Specific directory within Slicer3 tree to store batchmake xml description files (.bmm)

Meanwhile, we will continue to develop the KWWidgets application allowing group comparison.

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<h1>Progress</h1>

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===References===

← Older revision		Revision as of 16:58, 9 January 2009
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	During the week, a better integration of the module in Slicer3 was done.		During the week, a better integration of the module in Slicer3 was done.
		+
	We also worked on the quality control. A "mrml" scene is created at the end of the pipeline. This scene contains different Slicer3 snapshots representing the different steps. There is still a small bug with the mrml scene but it is close to be fixed.		We also worked on the quality control. A "mrml" scene is created at the end of the pipeline. This scene contains different Slicer3 snapshots representing the different steps. There is still a small bug with the mrml scene but it is close to be fixed.

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 <h1>Progress</h1>
+During the week, a better integration of the module in Slicer3 was done.
 </div>

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 |[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
 |[[Image:Screenshot_Slicer.jpg|thumb|250px|Screenshot of the application]]
-|valign="center"|[[Image:Schema_pipeline.jpg|thumb|600px|Pipeline description]]
+|valign="center"|[[Image:Schema_pipeline_ARCTIC.jpg|thumb|600px|Pipeline description]]
 |}