2009 Winter Project Week Gofigure LevelSet - Revision history

Singhsh: /* Key Investigators */

2009-01-09T16:33:57Z

Key Investigators

Singhsh at 18:01, 5 January 2009

2009-01-05T18:01:56Z

Singhsh at 16:28, 5 January 2009

2009-01-05T16:28:46Z

Singhsh at 16:14, 5 January 2009

2009-01-05T16:14:56Z

Singhsh at 16:01, 5 January 2009

2009-01-05T16:01:09Z

Singhsh: /* References */

2009-01-05T15:59:11Z

References

Singhsh: /* Key Investigators */

2009-01-05T15:49:21Z

Key Investigators

Agouaillard: New page: {| |Project Week Main Page ]] |[[]] |[[]] |} NOTOC ===Key Investigators=== * kishore mosanliganti, Harvard ...

2008-12-16T17:18:04Z

New page: {| |thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page ]] |[[]] |[[]] |} __NOTOC__ ===Key Investigators=== * kishore mosanliganti, Harvard ...

New page

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|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
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__NOTOC__

===Key Investigators===
* kishore mosanliganti, Harvard Medical School
* Arnaud Gelas, Harvard Medical School
* Alexandre Gouaillard, Harvard Medical School

<div style="margin: 20px;">

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Objective</h1>
* Implement references 1, 2, 3 in ITK
* Write corresponding IJ paper
* submit to IJ

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h1>Approach, Plan</h1>
* Filters are already implemented
* Code Review with an ITK expert (luis/bill/jim?)
* Run on cell datasets
* Write IJ paper
* Submit

</div>

<div style="width: 40%; float: left;">

<h1>Progress</h1>

</div>

<br style="clear: both;" />

</div>

===References===
# Kishore Mosaliganti, Lee Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang and Joel Saltz. Reconstruction of Cellular Biological Structures from Optical Microscopy Data. In IEEE Transactions in Visualization and Computer Graphics, 14 (4), pp. 863-876, July/August 2008.
# Tensor Classification of N-point Correlation Function features for Histology Tissue Segmentation. K. Mosaliganti, F. Janoos, O. Irfanoglu, R. Ridgway, R. Machiraju, K. Huang, J. Saltz, G. Leone and M. Ostrowski. Special Issue on Medical Image Analysis with Applications in Biology, Journal of Medical Image Analysis, 2008.
# Gang Li, Tianming Liu, Ashley Tarokh, Jingxin Nie, Lei Guo, Andrew Mara, Scott Holley and Stephen TC Wong. 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biology, 8:40, 2007.

@@ Line 36: / Line 36: @@
 * Run on cell datasets and build relevant tests
 * Write IJ paper
 </div>
@@ Line 43: / Line 42: @@
 <h1>Progress</h1>
+* Improved code quality by making it more memory and run-time efficient
 </div>

← Older revision		Revision as of 18:01, 5 January 2009
Line 13:		Line 13:
	* Arnaud Gelas, Harvard Medical School		* Arnaud Gelas, Harvard Medical School
	* Alexandre Gouaillard, Harvard Medical School		* Alexandre Gouaillard, Harvard Medical School
		+	* Luca Antiga, Mario Negri Institute
		+	* Luis Ibanez, Kitware

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@@ Line 50: / Line 50: @@
 ===References===
 # Kishore Mosaliganti, Lee Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang and Joel Saltz. Reconstruction of Cellular Biological Structures from Optical Microscopy Data. In IEEE Transactions in Visualization and Computer Graphics, 14 (4), pp. 863-876, July/August 2008.
 # Tensor Classification of N-point Correlation Function features for Histology Tissue Segmentation. K. Mosaliganti, F. Janoos, O. Irfanoglu, R. Ridgway, R. Machiraju, K. Huang, J. Saltz, G. Leone and M. Ostrowski. Special Issue on Medical Image Analysis with Applications in Biology, Journal of Medical Image Analysis, 2008.
 # Gang Li, Tianming Liu, Ashley Tarokh, Jingxin Nie, Lei Guo, Andrew Mara, Scott Holley and Stephen TC Wong. 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biology, 8:40, 2007.

@@ Line 10: / Line 10: @@
 ===Key Investigators===
-* kishore mosanliganti, Harvard Medical School
+* Kishore Mosaliganti,  Harvard Medical School
 * Arnaud Gelas,         Harvard Medical School
 * Alexandre Gouaillard, Harvard Medical School
@@ Line 20: / Line 20: @@
 <h1>Objective</h1>
-* Implement references 1, 2, 3 in ITK
+* Implement a 3D+t image analysis pipeline for multistain microscopy images
-* Write corresponding IJ paper
+* Use references 1-4 for preprocessing, cell segmentation and tracking in ITK
-* submit to IJ
+* Make a submission to Insight Journal
@@ Line 30: / Line 30: @@
 <h1>Approach, Plan</h1>
-* Filters are already implemented
+* First prototype of filters are already implemented
-* Code Review with an ITK expert (luis/bill/jim?)
+* Code review to be done with an ITK expert (luis/bill/jim?)
-* Run on cell datasets
+* Run on cell datasets and build relevant tests
 * Write IJ paper
 * Submit

2009 Winter Project Week Gofigure LevelSet - Revision history

Singhsh: /* Key Investigators */

Singhsh at 18:01, 5 January 2009

Singhsh at 16:28, 5 January 2009

Singhsh at 16:14, 5 January 2009

Singhsh at 16:01, 5 January 2009

Singhsh: /* References */

Singhsh: /* Key Investigators */

Agouaillard: New page: {| |Project Week Main Page ]] |[[]] |[[]] |} __NOTOC__ ===Key Investigators=== * kishore mosanliganti, Harvard ...

Agouaillard: New page: {| |Project Week Main Page ]] |[[]] |[[]] |} NOTOC ===Key Investigators=== * kishore mosanliganti, Harvard ...