2009 Winter Project Week UtahPlugins - Revision history

Prastawa at 18:33, 9 January 2009

2009-01-09T18:33:24Z

Prastawa at 22:33, 8 January 2009

2009-01-08T22:33:52Z

Prastawa: New page: {| |Project Week Main Page ]] |} NOTOC ===Key Investigators=== * Marcel Prastawa, Utah 2 * Steve Pieper, Is...

2008-12-12T22:12:36Z

New page: {| |thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page ]] |} __NOTOC__ ===Key Investigators=== * Marcel Prastawa, Utah 2 * Steve Pieper, Is...

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|[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
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__NOTOC__

===Key Investigators===
* Marcel Prastawa, Utah 2
* Steve Pieper, Isomics, Inc.

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<h1>Objective</h1>
itkEMS is a brain MRI segmentation software that combines registration and bias correction. It is currently in use at UNC-CH and Utah as a general purpose segmentation tool, and has also been applied as a method for skull stripping structural and DT MRI. It is currently available as a stand-alone software that uses ITK and FLTK.

The goal of this project is to develop Slicer plugins that incorporate different components of the segmentation software to provide the NA-MIC community with the capability of developing their own custom segmentation pipelines.
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<h1>Approach, Plan</h1>
We plan to develop different plugins using CLP that can be combined together to form a segmentation pipeline. We will explore the use of the module chaining mechanism developed by Marco.
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<h1>Progress</h1>
We have implemented a preliminary version of a registration and segmentation plugins using CLP.
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 <h1>Progress</h1>
 We have implemented and tested a preliminary version of a registration and segmentation plugins using CLP.
 Remaining task:
-Better integration with Slicer by having MRML output that can be used for subsequent processing within Slicer.
+Better integration with Slicer by having MRML outputs that can be used for subsequent processing within Slicer.
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 {|
 |[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
 |}
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 __NOTOC__
+<nowiki>Insert non-formatted text here</nowiki>
 ===Key Investigators===
 * Marcel Prastawa, Utah 2
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 <h1>Progress</h1>
-We have implemented a preliminary version of a registration and segmentation plugins using CLP.
+We have implemented and tested a preliminary version of a registration and segmentation plugins using CLP.
 </div>

2009 Winter Project Week UtahPlugins - Revision history

Prastawa at 18:33, 9 January 2009

Prastawa at 22:33, 8 January 2009

Prastawa: New page: {| |Project Week Main Page ]] |} __NOTOC__ ===Key Investigators=== * Marcel Prastawa, Utah 2 * Steve Pieper, Is...

Prastawa: New page: {| |Project Week Main Page ]] |} NOTOC ===Key Investigators=== * Marcel Prastawa, Utah 2 * Steve Pieper, Is...