2010 NAMIC Project week:Slicer4Icons - Revision history

Wjp: /* Key Investigators */

2010-06-25T10:42:50Z

Key Investigators

Wjp: /* Key Investigators */

2010-06-21T01:37:45Z

Key Investigators

Wjp at 01:35, 21 June 2010

2010-06-21T01:35:46Z

Wjp at 01:34, 21 June 2010

2010-06-21T01:34:09Z

Wjp at 01:31, 21 June 2010

2010-06-21T01:31:08Z

Wjp at 01:29, 21 June 2010

2010-06-21T01:29:29Z

Wjp at 20:25, 15 June 2010

2010-06-15T20:25:13Z

Wjp: /* Key Investigators */

2010-06-15T20:23:23Z

Key Investigators

Wjp at 20:22, 15 June 2010

2010-06-15T20:22:17Z

Wjp: Created page with 'NOTOC Image:PW-MIT2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

2010-06-15T20:02:08Z

Created page with '__NOTOC__ <gallery> Image:PW-MIT2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

New page

__NOTOC__
<gallery>
Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
</gallery>

==Instructions for Use of this Template==
#Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
#Copy the entire text of this page into the page created above
#Link the created page into the list of projects for the project event
#Delete this section from the created page
#Send an email to tkapur at bwh.harvard.edu if you are stuck

==Key Investigators==
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
* Utah: Tom Fletcher, Ross Whitaker

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.

Our plan for the project week is to first try out <bar>,...

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

#ITK Module
#Slicer Module
##Built-in
##Extension -- commandline
##Extension -- loadable
#Other (Please specify)

==References==
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

</div>

@@ Line 13: / Line 13: @@
 <h3>Objective</h3>
 We are reworking icons for Slicer3 to make them appropriate for Qt in Slicer4. Want to keep the same representation, just put on transparent background and make use of Qt's ability to scale icons for different sized displays. We'll use the opportunity to make consistent visual representations for underlying concepts, so users can translate knowledge across Slicer GUIs.
 </div>
@@ Line 25: / Line 20: @@
 <h3>Approach, Plan</h3>
-Our approach will be to redraw icons in actual res and in high-res on transparant background for Qt. Consolidate visual images and ensure that the icons are available to all developers to promote consistent use across modules.
+First we'll discuss needs for any new icons which don't already exist in Slicer's vtkSlicerFoundationIcons class. Wendy will gather recommendations from Julien and JC, based on their work so far, for modifying existing icons. Then, our approach will be to redraw icons in actual res and in high-res on transparant background for Qt. Consolidate visual images and ensure that the icons are available to all developers to promote consistent use across modules.
 </div>
@@ Line 33: / Line 28: @@
 <h3>Progress</h3>
 </div>

← Older revision		Revision as of 01:37, 21 June 2010
Line 12:		Line 12:

	<h3>Objective</h3>		<h3>Objective</h3>
−	We are reworking icons for Slicer3 to make them appropriate for Qt in Slicer4. Want to keep the same representation, just put on transparent background and make use of Qt's ability to scale icons for different sized displays.	+	We are reworking icons for Slicer3 to make them appropriate for Qt in Slicer4. Want to keep the same representation, just put on transparent background and make use of Qt's ability to scale icons for different sized displays. We'll use the opportunity to make consistent visual representations for underlying concepts, so users can translate knowledge across Slicer GUIs.

← Older revision		Revision as of 20:25, 15 June 2010
Line 5:		Line 5:
	</gallery>		</gallery>

		+	[[2010_Summer_Project_Week#NA-MIC_Kit_Internals \| Back to NA-MIC Kit Internals, Summer Project Week 2010]]

	==Key Investigators==		==Key Investigators==

← Older revision		Revision as of 20:23, 15 June 2010
Line 14:		Line 14:

	<h3>Objective</h3>		<h3>Objective</h3>
−	We are ~~developing methods~~ for ~~analyzing diffusion tensor data along fiber tracts~~. ~~The goal is~~ to ~~be able~~ to ~~make statistical group comparisons with fiber tracts as a common reference frame~~ for ~~comparison~~.	+	We are reworking icons for Slicer3 to make them appropriate for Qt in Slicer4. Want to keep the same representation, just put on transparent background and make use of Qt's ability to scale icons for different sized displays.

@@ Line 1: / Line 1: @@
 __NOTOC__
 <gallery>
-Image:Slicer3Icons.png
+Image:Slicer3Icons.png|[[2010_Summer_Project_Week#NA-MIC_Kit_Internals | Back to NA-MIC Kit Internals, Summer Project Week 2010]]
 </gallery>
 ==Key Investigators==

@@ Line 1: / Line 1: @@
 __NOTOC__
 <gallery>
-Image:PW-MIT2010.png|[[2010_Summer_Project_Week#Projects|Projects List]]
+Image:blank.png|icons
-Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+Image:blank.png|messages
 </gallery>
 ==Key Investigators==
-* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
+* BWH: Wendy
-* Utah: Tom Fletcher, Ross Whitaker
+* Kitware: JC, Julien
 <div style="margin: 20px;">
@@ Line 34: / Line 27: @@
 <h3>Approach, Plan</h3>
-Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
+Our approach will be to redraw icons in actual res and in high-res on transparant background for Qt. Consolidate visual images and ensure that the icons are available to all developers to promote consistent use across modules.
 </div>
@@ Line 43: / Line 34: @@
 <h3>Progress</h3>
@@ Line 53: / Line 43: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
+This work will be delivered to the NA-MIC Kit as:
 #ITK Module
@@ Line 60: / Line 50: @@
 ##Extension -- commandline
 ##Extension -- loadable
-#Other (Please specify)
+#Other (GUI infrastructure)
 ==References==
 </div>

2010 NAMIC Project week:Slicer4Icons - Revision history

Wjp: /* Key Investigators */

Wjp: /* Key Investigators */

Wjp at 01:35, 21 June 2010

Wjp at 01:34, 21 June 2010

Wjp at 01:31, 21 June 2010

Wjp at 01:29, 21 June 2010

Wjp at 20:25, 15 June 2010

Wjp: /* Key Investigators */

Wjp at 20:22, 15 June 2010

Wjp: Created page with '__NOTOC__ Image:PW-MIT2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

Wjp: Created page with 'NOTOC Image:PW-MIT2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'