2010 Winter Project Week LongitudinalLupusAnalyses - Revision history

Mscully: Added images

2010-01-08T15:40:27Z

Added images

Mscully: Updated Objective, Approach, and Progress

2010-01-04T04:26:33Z

Updated Objective, Approach, and Progress

Hjbockholt: /* Key Investigators */

2009-12-03T22:02:48Z

Key Investigators

Hjbockholt: /* References */

2009-12-03T21:58:15Z

References

Hjbockholt: /* Key Investigators */

2009-12-03T21:55:43Z

Key Investigators

Hjbockholt: /* Instructions for Use of this Template */

2009-12-03T21:54:47Z

Instructions for Use of this Template

Hjbockholt: Created page with 'NOTOC Image:PW-SLC2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

2009-12-03T21:42:51Z

Created page with '__NOTOC__ <gallery> Image:PW-SLC2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

New page

__NOTOC__
<gallery>
Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
</gallery>

==Instructions for Use of this Template==
#Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
#Copy the entire text of this page into the page created above
#Link the created page into the list of projects for the project event
#Delete this section from the created page
#Send an email to tkapur at bwh.harvard.edu if you are stuck

==Key Investigators==
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
* Utah: Tom Fletcher, Ross Whitaker

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.

Our plan for the project week is to first try out <bar>,...

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.

</div>
</div>

<div style="width: 97%; float: left;">

==References==
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

</div>

@@ Line 15: / Line 15: @@
 <h3>Objective</h3>
-Adapt Change tracker to handle multiple sequences and adjust functionality for handling multiple lesions.
@@ Line 26: / Line 27: @@
 <h3>Approach, Plan</h3>
 </div>
@@ Line 32: / Line 36: @@
 <h3>Progress</h3>
 </div>

← Older revision		Revision as of 22:02, 3 December 2009
Line 15:		Line 15:
	<h3>Objective</h3>		<h3>Objective</h3>

−		+	Adapt Change tracker to handle multiple sequences and adjust functionality for handling multiple lesions.

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
-Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+Image:CompareViewFlairLesionDiffWholeBrain.png|Flair with lesion diff.
-Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
+Image:CompareViewFlairLesionDiff.png|Lesions Time1 Vs. Time2
 </gallery>

← Older revision		Revision as of 21:58, 3 December 2009
Line 39:		Line 39:

	==References==		==References==
−	*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
−	* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
−	* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
−	* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

	</div>		</div>

@@ Line 7: / Line 7: @@
 ==Key Investigators==
-* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
+* MRN: Mark Scully, Jeremy Bockholt
-* Utah: Tom Fletcher, Ross Whitaker
+* BWH: Steve Pieper
 <div style="margin: 20px;">
@@ Line 14: / Line 14: @@
 <h3>Objective</h3>
@@ Line 27: / Line 26: @@
 <h3>Approach, Plan</h3>
 </div>
@@ Line 36: / Line 32: @@
 <h3>Progress</h3>
 </div>

2010 Winter Project Week LongitudinalLupusAnalyses - Revision history

Mscully: Added images

Mscully: Updated Objective, Approach, and Progress

Hjbockholt: /* Key Investigators */

Hjbockholt: /* References */

Hjbockholt: /* Key Investigators */

Hjbockholt: /* Instructions for Use of this Template */

Hjbockholt: Created page with '__NOTOC__ Image:PW-SLC2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

Hjbockholt: Created page with 'NOTOC Image:PW-SLC2010.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'