2010 Winter Project Week RegistrationCaseLibrary - Revision history

Meier: /* Progress: Target Projects */

2010-01-07T21:57:42Z

Progress: Target Projects

Meier: /* Progress: Target Projects */

2010-01-07T21:47:35Z

Progress: Target Projects

Meier: /* Progress: Notes */

2010-01-07T20:48:48Z

Progress: Notes

Meier: /* Progress: Target Projects */

2010-01-07T19:09:01Z

Progress: Target Projects

Meier: /* Progress: Target Projects */

2010-01-07T19:07:55Z

Progress: Target Projects

Meier: /* Progress: Target Projects */

2010-01-07T19:07:16Z

Progress: Target Projects

Meier: /* Progress: Target Projects */

2010-01-07T19:05:47Z

Progress: Target Projects

Meier: /* The 3DSlicer Registration Case Library Project */

2010-01-07T17:38:30Z

The 3DSlicer Registration Case Library Project

Meier: /* Key Investigators */

2010-01-07T17:19:58Z

Key Investigators

Meier at 17:07, 7 January 2010

2010-01-07T17:07:21Z

@@ Line 80: / Line 80: @@
 **[[Tissue_Dependent_Registration|Registration with Varying Elastic Parameters]] (Peter Risholm)
 **COPD Gene Collaboration (Raul San Jose)
-**lung CT datasets for group registration
+***lung CT datasets for group registration
-**library dataset: in deliberation
+***library dataset: in deliberation
 *'''IGT'''
 ** [[2010_Winter_Project_Week_MRI_Guided_Robotic_Prostate_Intervention| MRI-guided Robotic Prostate Intervention]] (Andras Lasso and '''Junichi Tokuda'''): Transperineal device: includes registration, where accuracy should be improved; currently the registration is based on a single-slice image; it could possible to improve the accuracy by increasing the number of slices used for the registration.

@@ Line 79: / Line 79: @@
 ***final atlas needs to move into patient-specific stereotactic space, there is no intra-operative scan.
 **[[Tissue_Dependent_Registration|Registration with Varying Elastic Parameters]] (Peter Risholm)
 *'''IGT'''
 ** [[2010_Winter_Project_Week_MRI_Guided_Robotic_Prostate_Intervention| MRI-guided Robotic Prostate Intervention]] (Andras Lasso and '''Junichi Tokuda'''): Transperineal device: includes registration, where accuracy should be improved; currently the registration is based on a single-slice image; it could possible to improve the accuracy by increasing the number of slices used for the registration.

@@ Line 100: / Line 100: @@
 *the ''manual alignment'' aka ''transforms module'' is well used and important to the user community. The rotation history slider and direct image dragging and rotating are frequent requests. Also addition of scale (& shear)
 *the ''Fiducial Bspline'' module is back. After being removed in consideration there are now users that would receive great value added from this. Esp. the category of ''Registration Repair'', i.e. small manual corrections to an (automated) calculated Xform.
 ==References==

@@ Line 57: / Line 57: @@
 ***library addition: yes
 **[[2010_Winter_Project_Week_Musco_Skeletal_Segmentation | Rapid Segmentation of Knee Structures for Simulation]] (Harish Doddi, Saikat Pal, Luis Ibanez, Scott Delp)
-***[[Media:RegLib_DATA_knee.zip.zip‎]]
+***excellent registration challenge, requires multiple approaches: masking, fiducials, surfaces
 **[[2010_Winter_Project_Week_ProstateSeg|Prostate segmentation using shape-based method]] (Yi Gao):
 ***Does involve co-registration of an atlas

@@ Line 56: / Line 56: @@
 ***precision: ***, robustness: **, speed: *
 ***library addition: yes
-*[[2010_Winter_Project_Week_Musco_Skeletal_Segmentation | Rapid Segmentation of Knee Structures for Simulation]] (Harish Doddi, Saikat Pal, Luis Ibanez, Scott Delp)
+**[[2010_Winter_Project_Week_Musco_Skeletal_Segmentation | Rapid Segmentation of Knee Structures for Simulation]] (Harish Doddi, Saikat Pal, Luis Ibanez, Scott Delp)
-**[[Media:RegLib_DATA_knee.zip.zip‎]]
+***[[Media:RegLib_DATA_knee.zip.zip‎]]
 **[[2010_Winter_Project_Week_ProstateSeg|Prostate segmentation using shape-based method]] (Yi Gao):
 ***Does involve co-registration of an atlas

@@ Line 38: / Line 38: @@
 <h3>Progress</h3>
 *see below for list of projects/contacts for new use cases: [[2010_Winter_Project_Week_RegistrationCaseLibrary#Target Projects]]
-*consider a ''priority matrix'' for each case that lists the requirements for robustness, precision, speed. E.g. change tracking applications rank high in precision but low in the other two, IGT applications rank high in speed and robustness etc.
+*consider a '''priority matrix''' for each case that lists the requirements for robustness, precision, speed. E.g. change tracking applications rank high in precision but low in the other two, IGT applications rank high in speed and robustness etc.
 *'''modularity issue''': (entropy) many implement their own registration module ->cannot benefit from synergies/parallel dev elopment outside ITK
 *'''MIDAS''': discussed with Steve & Casey the use of MIDAS server to host the case library; this would enable additional use of library cases for automated testing (CTest)
-*the ''manual alignment'' aka ''transforms module'' is well used and important to the user community. The rotation history slider and direct image dragging and rotating are frequent requests. Also addition of scale (& shear)
+*the '''manual alignment''' aka ''transforms module'' is well used and important to the user community. The rotation history slider and direct image dragging and rotating are frequent requests. Also addition of scale (& shear)
 *the ''Fiducial Bspline'' module is back. After being removed in consideration there are now users that would receive great value added from this. Esp. the category of ''Registration Repair'', i.e. small manual corrections to an (automated) calculated Xform.