2010 Winter Project Week SegmentationWizard - Revision history

Mscully: /* Key Investigators */ Updated progress

2010-01-08T15:45:23Z

Key Investigators: Updated progress

2010-01-08T15:40:52Z

2010-01-06T22:00:22Z

Added new images

2010-01-04T20:59:54Z

Key Investigators

2010-01-04T04:17:34Z

Added additional module to examine

2010-01-04T04:03:59Z

Fixed Progress spacing

2010-01-04T04:03:04Z

Updated Progress

2010-01-04T03:58:51Z

Fixed spacing

2010-01-04T03:57:26Z

Updated Approach and Progress

2009-12-03T21:48:35Z

References

@@ Line 23: / Line 23: @@
 '''2.''' Diagram all possible branches with requirements.
-'''3.''' Use the python scripting system to tie all the different modules together with branching logic.
+'''3.''' Use QT to create the UI and tie all relevant modules together.
@@ Line 40: / Line 40: @@
 ''At the meeting'':
-'''1.''' Meet with individuals responsible for relevant modules and identify any issues.
+'''1.''' Met with individuals responsible for relevant modules and identified potential issues.
-'''2.''' Work with Steve Pieper to implement prototype wizard.
+'''2.''' Met with Steve Pieper on using QT for the wizard
-'''3.''' Get feedback on wizard prototype.
+'''3.''' Worked with Hans to adapt his BRAINSABC tool to work on our data.  This accomplishes most of our preprocessing needs.
 </div>
 </div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
 </gallery>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
-Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+Image:CompareViewFlairLesionDiffWholeBrain.png|Flair with lesion diff.
-Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
+Image:CompareViewFlairLesionDiff.png|Lesions Time1 Vs. Time2
 </gallery>

@@ Line 14: / Line 14: @@
 <h3>Objective</h3>
-To implement a high level wizard that performs all necesary pre-processing steps and then segments lesion images.
+To implement a high level wizard that performs all necessary pre-processing steps and then segments lesion images.
 </div>
@@ Line 47: / Line 47: @@
 '''3.''' Get feedback on wizard prototype.
 </div>

@@ Line 35: / Line 35: @@
 ''Prior to the meeting'':
-'''1.''' Identified a number of modules to incorporate assuming they are production ready (BiasCorrection, ProbabilisticBiasCorrection, RegisterImages, BrainsConstellation, etc).
+'''1.''' Identified a number of modules to incorporate assuming they are production ready (SkullStripping, BiasCorrection, ProbabilisticBiasCorrection, RegisterImages, BrainsConstellation, etc).
 '''2.''' Implemented a number of other modules that were needed but didn't yet exist (JointIntensityStandardization, LupusLesionSegmenter)

@@ Line 21: / Line 21: @@
 <h3>Approach, Plan</h3>
-'''1.'''Verify that all required sub-modules are production ready.
+'''1.''' Verify that all required sub-modules are production ready.
-'''2.'''Diagram all possible branches with requirements.
+'''2.''' Diagram all possible branches with requirements.
-'''3.'''Use the python scripting system to tie all the different modules together with branching logic.
+'''3.''' Use the python scripting system to tie all the different modules together with branching logic.
@@ Line 33: / Line 33: @@
 <h3>Progress</h3>
-'''1.'''Identified a number of modules to incorporate assuming they are production ready (BiasCorrection, ProbabilisticBiasCorrection, RegisterImages, BrainsConstellation, etc).
+''Prior to the meeting'':
 '''1.''' Identified a number of modules to incorporate assuming they are production ready (BiasCorrection, ProbabilisticBiasCorrection, RegisterImages, BrainsConstellation, etc).
 </div>
 </div>

← Older revision		Revision as of 21:48, 3 December 2009
Line 39:		Line 39:

	==References==		==References==
−	*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
−	* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
−	* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
−	* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

	</div>		</div>