2010 Winter Project Week ThalamicNucleiAtlas - Revision history

Meier: /* Key Investigators */

2010-01-07T22:22:25Z

Key Investigators

Meier at 20:08, 23 December 2009

2009-12-23T20:08:29Z

Meier at 20:08, 23 December 2009

2009-12-23T20:08:20Z

Meier at 20:07, 23 December 2009

2009-12-23T20:07:20Z

Meier: Created page with 'NOTOC Image:PW-SLC2010.png|Projects List Image: image1.pgn |MRI image of a Parkinson patient Image: image3.pgn |An example of…'

2009-12-23T20:03:46Z

Created page with '__NOTOC__ <gallery> Image:PW-SLC2010.png|Projects List Image: image1.pgn |MRI image of a Parkinson patient Image: image3.pgn |An example of…'

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<gallery>
Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
Image: image1.pgn |MRI image of a Parkinson patient
Image: image3.pgn |An example of the atlas
</gallery>

==Key Investigators==
* University of Massachusetts Medical Center: Andrzej Przybyszewski
* BWH: Dominik Meier, Ron Kikinis

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<h3>Objective</h3>
We'll probably need a 2-step registration that first aligns the clipped FOV with the same subjects anatomy reference and then align the latter with the atlas. Once we have good specs for our input data, we can lay down a processing strategy. Masking via a manually defined ROI seems a likely candidate for this problem as well.
We are planning to use 3D mean atlas of the thalamus generated from multiple histological data register it with individual Parkinson patient (PD) data, convert using VTK to SPL files and implement into Guideline 4000 electrophysiological workstation.
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<h3>Approach, Plan</h3>

Our plan for the project week is to register thalamus atlas with individual PD MRI data using Slicer 3.5.

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<h3>Progress</h3>

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==References==
*Registration using Slicer 3.5, [http://www.na-mic.org/Wiki/index.php/October_08_2009_Meeting:_VT-NAMIC_Revised_atlas_construction_workflow] module
Krauth A, Blanc R, Poveda A, Jeanmonod D, Morel A, Székely G. A mean three-dimensional atlas of the human thalamus: Generation from multiple histological data. Neuroimage. 2009 Oct 21
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 <gallery>
 Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
-Image:  PDFusion_001.png |300px|MRI image of a Parkinson patient
+Image:  PDFusion_001.png |MRI image of a Parkinson patient
 Image:PDFusion_003.png |An example of the atlas
 </gallery>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
-Image:  PDFusion_001.png |MRI image of a Parkinson patient
+Image:  PDFusion_001.png |300px|MRI image of a Parkinson patient
 Image:PDFusion_003.png |An example of the atlas
 </gallery>

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 <h3>Progress</h3>
+  [[File:RegAnatomy.png]]
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 ==References==
 *Registration using Slicer 3.5, [http://www.na-mic.org/Wiki/index.php/October_08_2009_Meeting:_VT-NAMIC_Revised_atlas_construction_workflow] module
 Krauth A, Blanc R, Poveda A, Jeanmonod D, Morel A, Székely G. A mean three-dimensional atlas of the human thalamus: Generation from multiple histological data. Neuroimage. 2009 Oct 21
 </div>

2010 Winter Project Week ThalamicNucleiAtlas - Revision history

Meier: /* Key Investigators */

Meier at 20:08, 23 December 2009

Meier at 20:08, 23 December 2009

Meier at 20:07, 23 December 2009

Meier: Created page with '__NOTOC__ Image:PW-SLC2010.png|Projects List Image: image1.pgn |MRI image of a Parkinson patient Image: image3.pgn |An example of…'

Meier: Created page with 'NOTOC Image:PW-SLC2010.png|Projects List Image: image1.pgn |MRI image of a Parkinson patient Image: image3.pgn |An example of…'