2010 Winter Project Week catalyst - Revision history

Yong: /* Key Investigators */

2010-01-06T19:10:53Z

Key Investigators

Yong: /* Key Investigators */

2010-01-06T19:00:57Z

Key Investigators

Johnpaulett at 00:16, 5 January 2010

2010-01-05T00:16:07Z

RandyGollub at 01:56, 4 January 2010

2010-01-04T01:56:12Z

DanMarcus: Created page with ' ==Key Investigators== * Yong Gao * Randy Gollub * John Paulett * Tim Olsen * Dan Marcus

<…'

2009-12-21T17:45:10Z

Created page with ' ==Key Investigators== * Yong Gao * Randy Gollub * John Paulett * Tim Olsen * Dan Marcus <div style="margin: 20px;"> <div style="width: 27%; float: left; padding-right: 3%;"> <…'

New page

==Key Investigators==
* Yong Gao
* Randy Gollub
* John Paulett
* Tim Olsen
* Dan Marcus

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
Provide support to the Harvard Catalyst as they work to stand up XNAT throughout their user community.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>
Specific open issues:
#Contributing SubjectHandler Yong wrote into DicomServer release.
#Scan Level search capabilities for queries like "find all mr sessions with a usable MPRAGE scan". According to Tim, this is not an out-of-the-box thing offered by the REST API.
#Processing and loading images in NRRD format.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
</div>
</div>

<div style="width: 97%; float: left;">

</div>

@@ Line 30: / Line 30: @@
 #Most of the data should have a close map to XNAT schema. Extensions to XNAT are needed to cover Testing session and Clinic Visit. XNAT will add a new field for "site".
 #The SubjectHandler code was sent to Kevin Archie for consideration.
-#This is now supported in xnat 1.4 rc3.
+#This is now supported in xnat 1.4 rc3. Tim's example request would get a list of sessions with at least one usable MPRAGE from XNAT central: http://central.xnat.org/REST/experiments?xsiType=xnat:mrSessionData&format=xml&columns=ID,label,project&xnat:mrSessionData/scans/scan/quality=usable&xnat:mrSessionData/scans/scan/type=MPRAGE
 #NRRD files can be loaded just as any other files. New parser is needed to be written if it's is desired to get header information from the NRRD files.

← Older revision		Revision as of 00:16, 5 January 2010
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		+
		+	</div>
		+	==References==
		+	<div>
		+	[http://nrg.wikispaces.com/XNAT+Imaging+Data+Strategies http://nrg.wikispaces.com/XNAT+Imaging+Data+Strategies]

	</div>		</div>

@@ Line 18: / Line 18: @@
 <h3>Approach, Plan</h3>
 Specific open issues:
 #Contributing SubjectHandler Yong wrote into DicomServer release.
 #Scan Level search capabilities for queries like "find all mr sessions with a usable MPRAGE scan". According to Tim, this is not an out-of-the-box thing offered by the REST API.
@@ Line 27: / Line 28: @@
 <h3>Progress</h3>
-</div>
+#Most of the data should have a close map to XNAT schema. Extensions to XNAT are needed to cover Testing session and Clinic Visit. XNAT will add a new field for "site".
 </div>
@@ Line 35: / Line 40: @@
 </div>
 ==References==
 <div>

@@ Line 1: / Line 1: @@
 ==Key Investigators==
 * Yong Gao
@@ Line 11: / Line 10: @@
 <h3>Objective</h3>
-Provide support to the Harvard Catalyst as they work to stand up XNAT throughout their user community.
+Provide support to the Harvard Catalyst as they work to stand up XNAT throughout their user community.  Investigate the possibility that the Harvard Catalyst use case could be a model for additional CTSC sites that are also using the i2b2 framework, such as Emory University.
 </div>

2010 Winter Project Week catalyst - Revision history

Yong: /* Key Investigators */

Yong: /* Key Investigators */

Johnpaulett at 00:16, 5 January 2010

RandyGollub at 01:56, 4 January 2010

DanMarcus: Created page with ' ==Key Investigators== * Yong Gao * Randy Gollub * John Paulett * Tim Olsen * Dan Marcus <…'

DanMarcus: Created page with ' ==Key Investigators== * Yong Gao * Randy Gollub * John Paulett * Tim Olsen * Dan Marcus

<…'