2011 Summer Project Week Watersheds - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:03Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Pieper: /* Key Investigators */

2011-06-24T15:09:43Z

Key Investigators

Cates: /* Key Investigators */

2011-06-23T21:42:17Z

Key Investigators

Cates: /* Key Investigators */

2011-06-23T21:37:33Z

Key Investigators

Cates: /* Key Investigators */

2011-06-23T21:20:02Z

Key Investigators

Cates: /* Key Investigators */

2011-06-23T21:17:50Z

Key Investigators

Cates: /* Key Investigators */

2011-06-23T21:17:16Z

Key Investigators

Cates at 16:28, 8 June 2011

2011-06-08T16:28:28Z

Cates at 16:10, 8 June 2011

2011-06-08T16:10:20Z

Cates at 16:09, 8 June 2011

2011-06-08T16:09:24Z

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 Add it to slicer by adding the path to "../MyEditorTool" to the View->Application Settings->Module Settings list.
-Extension can also be registered with slicer nightly builds by constructing an s4ext file and giving it to slicer developers [see instructions in tutorial [http://www.na-mic.org/Wiki/images/2/23/AHM-2011-SlicerExtensions.pdf]
+Extension can also be registered with slicer nightly builds by constructing an s4ext file and giving it to slicer developers [see instructions in tutorial [https://na-mic.org/w/images/2/23/AHM-2011-SlicerExtensions.pdf]
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 The design is not completely finalized, but we have made good progress towards that goal.    Tentatively, we plan to python wrapping of the Watersheds logic and custom VTK classes, and integration through the new EditorExtension module type. Some experimentation with the new EditorExtensionTemplate will be required in order to finalize our design.
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 <h3>Progress</h3>
 <!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->
-The design is not completely finalized, but we have mad good progress towards that goal.    Tentatively, we plan to python wrapping of the Watersheds logic and custom VTK classes, and integration through the new EditorExtension module type. Some experimentation with the new EditorExtensionTemplate will be required in order to finalize our design.
+The design is not completely finalized, but we have made good progress towards that goal.    Tentatively, we plan to python wrapping of the Watersheds logic and custom VTK classes, and integration through the new EditorExtension module type. Some experimentation with the new EditorExtensionTemplate will be required in order to finalize our design.
 </div>

@@ Line 32: / Line 32: @@
 <h3>Progress</h3>
 <!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->
+The design is not completely finalized, but we have mad good progress towards that goal.    Tentatively, we plan to python wrapping of the Watersheds logic and custom VTK classes, and integration through the new EditorExtension module type. Some experimentation with the new EditorExtensionTemplate will be required in order to finalize our design.
 </div>

← Older revision		Revision as of 21:20, 23 June 2011
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	<h3>Progress</h3>		<h3>Progress</h3>
−
	<!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->		<!-- Fill this out before Friday's summary presentations - list what you did and how well it worked. -->

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 <h3>Objective</h3>
-The watersheds algorithm produces a hierarchical set of segmented objects.  For some applications, an interface exploring this hierarchical set has proven useful for assembling segmentations of complex anatomical structures. The goal of this project is to re-engineer the old ITKApps Watershed Segmentation Editor in Slicer.  The resulting tool will allow a user to interactively assemble 3D segmentations of image data using the output of the itk::WatershedImageFilter.  During Project Week, we anticipate finalizing the watershed tool implementation, taking advantage of the available Slicer engineering expertise to resolve any remaining technical challenges.
+The watersheds algorithm produces a hierarchical set of segmented objects.  For some applications, an interface exploring this hierarchical set has proven useful for assembling segmentations of complex anatomical structures. The goal of this project is to re-engineer the old ITKApps Watershed Segmentation Editor in Slicer.  The resulting tool will allow a user to interactively assemble 3D segmentations of image data using the output of the itk::WatershedImageFilter.  During Project Week, we anticipate finalizing the watershed tool design, taking advantage of the available Slicer engineering expertise to resolve any remaining technical challenges.
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 <h3>Approach, Plan</h3>
-Work on the Slicer version of the Watershed Segmenter is currently underway.  If development stays on schedule, we plan to use Project Week to work with collaborators and Slicer engineers to test and debug the tool.  Ideally we will also use Project Week time to develop a small tutorial for our tool.
+Work on the Slicer version of the Watershed Segmenter is currently underway.  Project week activities include planning for integration into Slicer 4.  Some additional Slicer infrastructure will be required to provide the level of interaction needed for this tool.
 <!-- What specific things you will be doing during the week: writing code?  trying code on specific datasets?  talking with other attendees?  All of the above? -->

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 </gallery>
-'''Interactive Watersheds Segmentation Module for Slicer for Atrial Fibrillation and HN Cancer'''
+'''Interactive Watersheds Segmentation Module for Slicer for Atrial Fibrillation and HN Cancer''' ... and general use for segmentation of complex structures!
 ==Key Investigators==
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 <h3>Objective</h3>
+The watersheds algorithm produces a hierarchical set of segmented objects.  For some applications, an interface exploring this hierarchical set has proven useful for assembling segmentations of complex anatomical structures. The goal of this project is to re-engineer the old ITKApps Watershed Segmentation Editor in Slicer.  The resulting tool will allow a user to interactively assemble 3D segmentations of image data using the output of the itk::WatershedImageFilter.  During Project Week, we anticipate finalizing the watershed tool implementation, taking advantage of the available Slicer engineering expertise to resolve any remaining technical challenges.
 </div>
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 <h3>Approach, Plan</h3>
 <!-- What specific things you will be doing during the week: writing code?  trying code on specific datasets?  talking with other attendees?  All of the above? -->
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 ==References==
+J. Cates, R. Whitaker, G. Jones, Case Study: An Evaluation of User-Assisted Hierarchical Watershed Segmentation, Medical Image Analysis, V.9, No.6, Dec. 2005
 <!-- Add links here to background material: where can we download the data?  where is the source code repository?  what papers or web sites will help someone quickly learn what the outstanding issues are? -->

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 <gallery>
 Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]]
-Image:SegmentationEditorITK.png|Watersheds Segmentation Editor
+Image:SegmentationEditorITK.gif|Watersheds Segmentation Editor
 </gallery>