2011 Winter Project Week:DTIPipeline - Revision history

Budin at 17:41, 14 January 2011

2011-01-14T17:41:37Z

Budin at 17:39, 14 January 2011

2011-01-14T17:39:29Z

Budin: /* Key Investigators */

2011-01-14T17:35:24Z

Key Investigators

Budin at 22:08, 14 December 2010

2010-12-14T22:08:28Z

Budin: Created page with 'NOTOC Image:PW-SLC2011.png|Projects List ==DTI registration/processing pipeline in Slicer3== ==Key Investigators=…'

2010-12-14T22:07:10Z

Created page with '__NOTOC__ <gallery> Image:PW-SLC2011.png|Projects List </gallery> ==DTI registration/processing pipeline in Slicer3== ==Key Investigators=…'

New page

__NOTOC__
<gallery>
Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
</gallery>

==DTI registration/processing pipeline in Slicer3==

==Key Investigators==
* UNC: Francois Budin

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing a pipeline that takes a DWI or a DTI as an input. It then reorients the image, computes the DTI if the given image is a DWI, computes a scalar image from the DTI and registers this image with a given reference image or atlas.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

The pipeline will be written as Slicer3 module which creates a Batchmake script that calls tools available in Slicer3.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
All the necessary individual tools are already available in Slicer3. The new module itself will be written during the 2011 Winter project week.

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

#ITK Module
#Slicer Module
##Built-in
##Extension -- commandline YES
##Extension -- loadable YES
#Other (Please specify)

</div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
 </gallery>
 ==DTI registration/processing pipeline in Slicer3==
 ==Key Investigators==

@@ Line 29: / Line 29: @@
 <h3>Progress</h3>
-All the necessary individual tools are already available in Slicer3. The new module itself will be written during the 2011 Winter project week.
+The command line module for this pipeline has been written. It is composed of a CLI module and some BatchMake scripts calling the tools used in the pipeline. Some tools used in the pipeline are not included in Slicer directly in Slicer and have to be integrated
 </div>