2012 Summer Project Week:AIM for QIN - Revision history

Nurad: /* Key Investigators */

2012-06-26T15:56:02Z

Key Investigators

Fedorov: /* Key Investigators */

2012-06-21T23:42:24Z

Key Investigators

Fedorov: /* Key Investigators */

2012-06-21T23:42:04Z

Key Investigators

Fedorov: /* Tuesday TCON */

2012-06-19T23:18:23Z

Tuesday TCON

Fedorov: /* Tuesday TCON */

2012-06-19T23:15:58Z

Tuesday TCON

Fedorov: /* Tuesday TCON */

2012-06-19T23:15:31Z

Tuesday TCON

Fedorov: /* Tuesday TCON */

2012-06-19T23:14:04Z

Tuesday TCON

Fedorov: /* Tuesday TCON */

2012-06-19T23:12:11Z

Tuesday TCON

Fedorov at 17:07, 19 June 2012

2012-06-19T17:07:20Z

Fedorov at 15:31, 19 June 2012

2012-06-19T15:31:43Z

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 * discussed the specific mechanisms available in AIM for storing multi-timepoint data with multiple lesions at each time-point:
 ** separate AIM files should be used for each individual segmentation
-** each annotation has to be associated with a single image
+** each annotation has to be associated with a single finding on an image or a set of images in the same series
 ** associations across the timepoints that correspond to a given patient can be recovered by means of querying the "AIM database" for a certain patient
 ** direct associations can be encoded using AnnotationOfAnnotations type; however, it is not supported by ClearCanvas (the only AIM workstation that is available to the QIN users). There is no plan to add this functionality in the foreseeable future

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 * U. Iowa: Reinhard Beichel, Markus Van Tol
 * MGH: Jayashree Kalpathy-Cramer
 <div style="margin: 20px;">

← Older revision		Revision as of 23:42, 21 June 2012
Line 54:		Line 54:

	<h3>Progress</h3>		<h3>Progress</h3>
		+
		+	* We had a TCON that included participants from BWH, MGH, Northwestern, Stanford and NCI.
		+	* discussed the specific mechanisms available in AIM for storing multi-timepoint data with multiple lesions at each time-point:
		+	** separate AIM files should be used for each individual segmentation
		+	** each annotation has to be associated with a single image
		+	** associations across the timepoints that correspond to a given patient can be recovered by means of querying the "AIM database" for a certain patient
		+	** direct associations can be encoded using AnnotationOfAnnotations type; however, it is not supported by ClearCanvas (the only AIM workstation that is available to the QIN users). There is no plan to add this functionality in the foreseeable future
		+	* discussed the plans for supporting cross-platform exchange of 3D segmentations
		+	** support for DICOM segmentation objects is very limited and not available on the workstations readily available
		+	** there is no plan for supporting DICOM seg objects in ClearCanvas
		+	** BWH is in the process of implementing DICOM seg support in 3D Slicer, but testing is limited to cross-check with syngo.via
		+	** an alternative has been suggested to use DICOM secondary capture to store segmentation label in NRRD format, which is widely supported by libraries and viewers
		+	** BWH will work with Daniel Rubin to exchange NRRD date wrapped in secondary capture and point to the code that does this packaging

	</div>		</div>

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 ==Tuesday TCON==
-Attended: Pat Mongkolwat, Daniel Rubin, Vlad Kleper, Andrey Fedorov, Reinhard Beichel, Marcus Van Tol, Jayashree Kalpathy-Cramer, Justin Kirby, Pallavi Tiwari
+Attended: Pat Mongkolwat, Daniel Rubin, Vlad Kleper, Nicole Aucoin, Andrey Fedorov, Reinhard Beichel, Marcus Van Tol, Jayashree Kalpathy-Cramer, Justin Kirby, Pallavi Tiwari
 * Pat Mongkolwat:

@@ Line 60: / Line 60: @@
 ==Tuesday TCON==
-Attended: Pat Mongkolwat, Daniel Rubin, Vlad Kleper, Andrey Fedorov, Reinhard Beichel, Marcus Van Tol, Jayashree Kalpathy-Cramer, Justin Kirby, Pallavi Tewari
+Attended: Pat Mongkolwat, Daniel Rubin, Vlad Kleper, Andrey Fedorov, Reinhard Beichel, Marcus Van Tol, Jayashree Kalpathy-Cramer, Justin Kirby, Pallavi Tiwari
 * Pat Mongkolwat:

@@ Line 59: / Line 59: @@
 ==Tuesday TCON==
 * Pat Mongkolwat:
@@ Line 75: / Line 77: @@
 ** since DICOM SEG is supported by very limited set of tools, we may consider using NRRD as a format referenced from AIM
 * Daniel:
@@ Line 81: / Line 84: @@
 * Reinhard:
-** what infrastructure is available in NIH for sharing AIM, and also for storing patient information (age, tests, clinical info)
+** would like to know what infrastructure is available in NIH for sharing AIM, and also for storing patient information (age, tests, clinical info)
 * Andrey:
 ** will send Slicer data bundle and a pointer to the code that creates/unpackages the scene and referenced data
 ==Delivery Mechanism==

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 </div>
-Meeting minutes:
+==Tuesday TCON==
 * Pat Mongkolwat:
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 *** Measurements derived from annotations
 *** Markup types (point, multipoint, polygon, circle) + segmentation object
 ==Delivery Mechanism==