2012 Summer Project Week:Intraoperative Tract Detection - Revision history

Lauren: /* Key Investigators */

2012-06-22T13:56:20Z

Key Investigators

2012-06-22T13:55:34Z

Key Investigators

2012-06-22T13:53:51Z

Key Investigators

2012-06-22T13:51:36Z

References

2012-06-22T13:50:13Z

Delivery Mechanism

2012-06-22T13:49:12Z

Key Investigators

2012-06-21T20:52:36Z

Key Investigators

2012-06-21T20:37:18Z

Key Investigators

2012-06-21T20:35:54Z

2012-06-15T16:35:08Z

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 ==Key Investigators==
-* BWH: Lauren O'Donnell, Isaiah Norton, Alex Golby
+* BWH: Lauren O'Donnell, Isaiah Norton, Alex Golby, Steve Pieper
 <div style="margin: 20px;">

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 Our approach for tract detection is to compare new tracts to the prior information (preoperative plan).
 Our plan for the project week is to integrate our Python code that has been developed for this project into a slicer module.
 </div>
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 <h3>Progress</h3>
-We have successfully imported our python package into Slicer. (Some aspects of its dependencies are unresolved, the optimization routines in scipy that we use for tract-based registration are not currently available in Slicer and we have met with Steve Pieper about using system Python and compiled his version of Slicer that may enable this moving forward). A new Slicer module GUI now allows comparison of whole-brain tracts to a tract of interest, see initial result image above.
+We have successfully imported our python package into Slicer. (Some aspects of its dependencies are unresolved, the optimization routines in scipy that we use for tract-based registration are not currently available in Slicer and we have met with Steve Pieper about using system Python and compiled his version of Slicer that may enable this moving forward). A new intial Slicer module GUI now allows comparison of whole-brain tracts to a tract of interest, see result image above.
 </div>

@@ Line 30: / Line 30: @@
 <h3>Progress</h3>
-We have successfully imported our python package into Slicer. (Some aspects of its dependencies are unresolved, the optimization routines in scipy that we use for tract-based registration are not currently available in Slicer and we have met with Steve Pieper about using system Python and compiled his version of Slicer that may enable this moving forward). A new Slicer module GUI now allows comparison of whole-brain tracts to a tract of interest, see example result.
+We have successfully imported our python package into Slicer. (Some aspects of its dependencies are unresolved, the optimization routines in scipy that we use for tract-based registration are not currently available in Slicer and we have met with Steve Pieper about using system Python and compiled his version of Slicer that may enable this moving forward). A new Slicer module GUI now allows comparison of whole-brain tracts to a tract of interest, see initial result image above.
 </div>

← Older revision		Revision as of 13:51, 22 June 2012
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	==References==		==References==
−	*	+	* O'Donnell LJ, Wells WM, Golby A, Westin CF. Unbiased groupwise registration of white matter tractography. To appear in Medical Image Computing and Computer Assisted Intervention. 2012.

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 This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
 #Slicer Module
 ##Built-in

← Older revision		Revision as of 20:52, 21 June 2012
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	<h3>Progress</h3>		<h3>Progress</h3>
−	We have imported our python ~~module~~ into Slicer (however some aspects of its dependencies are not resolved). A Slicer python GUI now allows comparison of whole-brain tracts to a tract of interest.	+	We have imported our python package into Slicer (however some aspects of its dependencies are not resolved). A new Slicer python module GUI now allows comparison of whole-brain tracts to a tract of interest.

← Older revision		Revision as of 20:37, 21 June 2012
Line 30:		Line 30:

	<h3>Progress</h3>		<h3>Progress</h3>
−		+	We have imported our python module into Slicer (however some aspects of its dependencies are not resolved). A Slicer python GUI now allows comparison of whole-brain tracts to a tract of interest.

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 Image:PreliminaryWorkFiberSimilarity.png|Fiber tract comparison to define similarity.
 Image:BrainShiftDiagram.png|Challenge of brain shift
 </gallery>

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 <gallery>
 Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
-Image:PreliminaryWorkFiberSimilarity.png|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+Image:PreliminaryWorkFiberSimilarity.png|Fiber tract comparison to define similarity.
-Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
+Image:BrainShiftDiagram.png|Challenge of brain shift
 </gallery>