2012 Summer Project Week:NiftyReg - Revision history

Mmodat at 14:22, 22 June 2012

2012-06-22T14:22:20Z

2012-06-22T14:19:35Z

2012-06-22T14:17:21Z

2012-06-21T17:13:12Z

Delivery Mechanism

2012-06-21T17:05:35Z

Key Investigators

2012-06-18T16:46:17Z

2012-06-18T15:58:20Z

2012-06-18T15:44:00Z

2012-06-18T15:42:35Z

2012-05-03T20:29:55Z

Undo revision 75053 by Xiaojun (Talk)

@@ Line 44: / Line 44: @@
 <h3>Progress</h3>
-The NRRD file format have been integrated into the NiftyReg package to ease its integration.
+* The NRRD file format have been integrated into the NiftyReg package to ease its integration.
+* The XML file for one of the executable of NiftyReg: reg_aladin has been created and the slicer module created.
-The XML file for one of the executable of NiftyReg: reg_aladin has been created and the slicer module created.
+* reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation.
-reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation.
+* The project CMake organisation has been altered to enable easy integration of the other executables.
 </div>

@@ Line 45: / Line 45: @@
 The NRRD file format have been integrated into the NiftyReg package to ease its integration.
 The XML file for one of the executable of NiftyReg: reg_aladin has been created and the slicer module created.
 reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation.
 </div>

@@ Line 58: / Line 58: @@
 == Reg_aladin Module screenshot==
 [[File:NiftyRegExtension_reg_aladin_module.png|800 px]]
 ==References==

@@ Line 56: / Line 56: @@
 <div style="width: 97%; float: left;">
-==Delivery Mechanism==
+== Reg_aladin Module screenshot==
+[[File:NiftyRegExtension_reg_aladin_module.png|800 px]]
 ==References==

← Older revision		Revision as of 17:05, 21 June 2012
Line 45:		Line 45:

	The NRRD file format have been integrated into the NiftyReg package to ease its integration.		The NRRD file format have been integrated into the NiftyReg package to ease its integration.
		+
		+	TCLAP has been incorporated into the NiftyReg project in order to enable the creation of a Slicer extension.
		+
		+	The XML file for one of the executable of NiftyReg: reg_aladin has been created and the slicer module created.
		+	reg_aladin is the global registration tool from NiftyReg. It is based on a block-matching approach to establish correspondences and a trimmed least square optimisation to determine the robust global transformation.

	</div>		</div>

← Older revision		Revision as of 15:58, 18 June 2012
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	<h3>Objective</h3>		<h3>Objective</h3>
−	[http://www.cs.ucl.ac.uk/staff/m.modat/Marcs_Page/Software.html NiftyReg] is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objectives ~~are (1)~~ to make NiftyReg available in Slicer ~~and (2) to create a ITK wrapper filter~~.	+	[http://www.cs.ucl.ac.uk/staff/m.modat/Marcs_Page/Software.html NiftyReg] is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objectives is to make NiftyReg available in Slicer.

@@ Line 14: / Line 14: @@
 * All dependencies are included into the project (nifticlib, zlib, [NRRD, png]).
 * Installation through CMake and step-by-step install can be found [http://sourceforge.net/projects/niftyreg/files/install_NiftyReg_macLinux.pdf/download here]
-* Trunk can be downloaded through svn: svn co https://niftyreg.svn.sourceforge.net/svnroot/niftyreg niftyreg
+* Trunk can be downloaded through svn: <nowiki>svn co https://niftyreg.svn.sourceforge.net/svnroot/niftyreg/trunk/nifty_reg niftyreg</nowiki>
 ==Key Investigators==

@@ Line 6: / Line 6: @@
 Image:Nifty_reg_logo.png|NiftyReg
 </gallery>
 ==Key Investigators==
@@ Line 15: / Line 24: @@
 <h3>Objective</h3>
-[http://www.cs.ucl.ac.uk/staff/m.modat/Marcs_Page/Software.html NiftyReg] is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objective is to make NiftyReg available in Slicer.
+[http://www.cs.ucl.ac.uk/staff/m.modat/Marcs_Page/Software.html NiftyReg] is an open-source package for rigid, affine and non-linear registration developed the team of Dr. Sebastien Ourselin at the Centre for Medical Imaging Computing, University College London, UK. The objectives are (1) to make NiftyReg available in Slicer and (2) to create a ITK wrapper filter.

@@ Line 8: / Line 8: @@
 ==Key Investigators==
-* SPL: Xiaojun Chen, Jan Egger, Tina Kapur, Steve Pieper
+* University College London: Marc Modat
-* LROC: Akila Viswanathan, Kanokpis Townamchai, Antonio Damato
+* BWH: Sonia Pujol
 <div style="margin: 20px;">
@@ Line 15: / Line 15: @@
 <h3>Objective</h3>
 </div>
@@ Line 23: / Line 26: @@
 <h3>Approach, Plan</h3>
-A software prototype supporting Gynecologic Radiation Treatment has already been pre-developed. The pre-developed software prototype has been brought to AMIGO cases and the workflow of the prototype has been discussed with the treating physician.
+Our approach is to develop a CLI module for NiftyReg in Slicer4.
 </div>
@@ Line 31: / Line 35: @@
 <h3>Progress</h3>
-Currently, a module for Slicer is under development. The module already allows the visualization of a gynecological template for brachytherapy in a preoperative patient dataset. Furthermore, interstitial needles can already be visualized for treatment planning.
 </div>