Mvantol: Removing contents of misspelled page

2012-05-16T21:32:08Z

Removing contents of misspelled page

Mvantol: Setting page to project template

2012-05-16T21:29:54Z

Setting page to project template

New page

__NOTOC__
<gallery>
Image:PW-MIT2012.png|[[2012_Summer_Project_Week#Projects|Projects List]]
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
</gallery>

==Instructions for Use of this Template==
#Please create a new wiki page with an appropriate title for your project using the convention 2012_Winter_Project_Week:<Project Name>
#Copy the entire text of this page into the page created above
#Link the created page into the list of projects for the project event
#Delete this section from the created page
#Send an email to tkapur at bwh.harvard.edu if you are stuck

==Key Investigators==
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
* Utah: Tom Fletcher, Ross Whitaker

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.

Our plan for the project week is to first try out <bar>,...

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.

</div>
</div>

<div style="width: 97%; float: left;">

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

#ITK Module
#Slicer Module
##Built-in
##Extension -- commandline
##Extension -- loadable
#Other (Please specify)

==References==
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

</div>

← Older revision		Revision as of 21:32, 16 May 2012
Line 1:		Line 1:
−	~~__NOTOC__~~
−	~~<gallery>~~
−	~~Image:PW-MIT2012.png\|[[2012_Summer_Project_Week#Projects\|Projects List]]~~
−	~~Image:genuFAp.jpg\|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.~~
−	~~Image:genuFA.jpg\|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.~~
−	~~</gallery>~~

−	~~==Instructions for Use of this Template==~~
−	~~#Please create a new wiki page with an appropriate title for your project using the convention 2012_Winter_Project_Week:<Project Name>~~
−	~~#Copy the entire text of this page into the page created above~~
−	~~#Link the created page into the list of projects for the project event~~
−	~~#Delete this section from the created page~~
−	~~#Send an email to tkapur at bwh.harvard.edu if you are stuck~~
−
−	~~==Key Investigators==~~
−	* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
−	* Utah: Tom Fletcher, Ross Whitaker
−
−	~~<div style="margin: 20px;">~~
−	~~<div style="width: 27%; float: left; padding-right: 3%;">~~
−
−	~~<h3>Objective</h3>~~
−	We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
−
−
−
−
−
−
−	~~</div>~~
−
−	~~<div style="width: 27%; float: left; padding-right: 3%;">~~
−
−	~~<h3>Approach, Plan</h3>~~
−
−	~~Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.~~
−
−	~~Our plan for the project week is to first try out <bar>,...~~
−
−	~~</div>~~
−
−	~~<div style="width: 40%; float: left;">~~
−
−	~~<h3>Progress</h3>~~
−	Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure\|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
−
−
−	~~</div>~~
−	~~</div>~~
−
−	~~<div style="width: 97%; float: left;">~~
−
−	~~==Delivery Mechanism==~~
−
−	~~This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)~~
−
−	~~#ITK Module~~
−	~~#Slicer Module~~
−	~~##Built-in~~
−	~~##Extension -- commandline~~
−	~~##Extension -- loadable~~
−	~~#Other (Please specify)~~
−
−	~~==References==~~
−	*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
−	* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
−	* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
−	* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
−
−	~~</div>~~

2012 Summer Project Week:QuantitativePETImageAnalyssisModule - Revision history

Mvantol: Removing contents of misspelled page

Mvantol: Setting page to project template