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	<title>2012 Summer Project Week:TimeSeriesMonitoringIntracranialBones - Revision history</title>
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		<title>Ktdiedrich: Time series monitoring of intracranial bones for watchful waiting of meningioma.</title>
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		<updated>2012-06-15T15:10:25Z</updated>

		<summary type="html">&lt;p&gt;Time series monitoring of intracranial bones for watchful waiting of meningioma.&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;__NOTOC__&lt;br /&gt;
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==Key Investigators==&lt;br /&gt;
* AZE Research and Development, Cambridge, MA: Karl Diedrich&lt;br /&gt;
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&amp;lt;h3&amp;gt;Objective&amp;lt;/h3&amp;gt;&lt;br /&gt;
* The goal of this project is to increase the performance (sensitivity and specificity) of detection of  bone involvement in meningioma. Meningiomas are the most common form of intracranial tumor [1]. Meningiomas are either managed by watchful waiting or treated by resection and optional radiation therapy [2]. Bone involvement signals a more dangerous form of disease with increased death rates and recurrence after treatment warranting more aggressiveness treatment [2], [3]. Bone involvement is detected by radiographic evidence of hyperostosis, bone sclerosis or osteolytic lesions [2]. Watchful waiting involves repeated time series imaging of patients by magnetic resonance imaging (MRI) following initial discovery often by computed tomography (CT).&lt;br /&gt;
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* Learn to develop Slicer commandline extensions&lt;br /&gt;
* Learn to develop Slicer modules &lt;br /&gt;
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&amp;lt;h3&amp;gt;Approach, Plan&amp;lt;/h3&amp;gt;&lt;br /&gt;
*Segment the intracranial bones by thresholding the intensity by histogram and keeping the largest connected component&lt;br /&gt;
*Rigid register the time series bone tissue. The sparse data from the segmentation will be converted into a filled out distance map for gradient descent optimization using the mutual information cost function for intermodality CT MRI registration.&lt;br /&gt;
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&amp;lt;h3&amp;gt;Progress&amp;lt;/h3&amp;gt;&lt;br /&gt;
* Segmented part of intracranial bone by intensity threshold. &lt;br /&gt;
* Turned the bone into a distance map and registered bone on the distance map. &lt;br /&gt;
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==Delivery Mechanism==&lt;br /&gt;
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Distance map module. &lt;br /&gt;
* Slicer Module&lt;br /&gt;
* Extension -- commandline&lt;br /&gt;
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==References==&lt;br /&gt;
#	 J. Wiemels, M. Wrensch, and E. B. Claus, “Epidemiology and etiology of meningioma,” J. Neurooncol., vol. 99, no. 3, pp. 307–314, Sep. 2010.&lt;br /&gt;
#	 D. Gabeau-Lacet, M. Aghi, R. A. Betensky, F. G. Barker, J. S. Loeffler, and D. N. Louis, “Bone Involvement Predicts Poor Outcome in Atypical Meningioma,” J Neurosurg, vol. 111, no. 3, pp. 464–471, Sep. 2009.&lt;br /&gt;
#	 R. Graf, M. Plotkin, I. G. Steffen, R. Wurm, P. Wust, W. Brenner, V. Budach, and H. Badakhshi, “Magnetic resonance imaging, computed tomography, and 68Ga-DOTATOC positron emission tomography for imaging skull base meningiomas with infracranial extension treated with stereotactic radiotherapy--a case series,” Head Face Med, vol. 8, p. 1, 2012.&lt;/div&gt;</summary>
		<author><name>Ktdiedrich</name></author>
		
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