2012 Winter Project Week:ScriptView - Revision history

Montillo: /* Key Investigators */

2012-01-13T17:02:39Z

Key Investigators

2012-01-13T16:35:09Z

Key Investigators

2012-01-13T16:21:52Z

Key Investigators

2012-01-13T16:17:37Z

2012-01-13T16:17:00Z

2012-01-13T16:12:03Z

2012-01-13T16:11:13Z

Key Investigators

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2012-01-13T16:05:11Z

Key Investigators

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@@ Line 10: / Line 10: @@
 * GE Research: Albert Montillo   (montillo@ge.com)
-Many thanks to : Steve Pieper
+* Isomics: Steve Pieper
 <div style="margin: 20px;">

@@ Line 8: / Line 8: @@
 ==Key Investigators==
-* GE Research: Albert Montillo
+* GE Research: Albert Montillo   (montillo@ge.com)
-Many thanks to : Steve Pieper (Isomics)
+Many thanks to : Steve Pieper
 <div style="margin: 20px;">

← Older revision		Revision as of 16:21, 13 January 2012
Line 26:		Line 26:
	<h3>Approach, Plan</h3>		<h3>Approach, Plan</h3>

−	Our approach is create a template MRML scene file and reuse it for each subject. MRML scene stores relative paths to items in the scene such as volumes. Python script is passed to Slicer to load ~~dthe~~ scene per subject and save image.<foo>.	+	Our approach is to create a template MRML scene file and reuse it for each subject. MRML scene stores relative paths to items in the scene such as volumes. Python script is passed to Slicer to load the scene per subject and save image.<foo>.

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2012.png|[[2012_Winter_Project_Week#Projects|Projects List]]
-Image:Subj1_II.|Subject1.
+Image:Subj1_II.png|Subject1.
-Image:Subj2_II.|Subject2.
+Image:Subj2_II.png|Subject2.
-Image:Subj3_II.|Subject3.
+Image:Subj3_II.png|Subject3.
 </gallery>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2012.png|[[2012_Winter_Project_Week#Projects|Projects List]]
-Image:genuFAp.jpg|Subject1.
+Image:Subj1_II.|Subject1.
-Image:genuFAp.jpg|Subject2.
+Image:Subj2_II.|Subject2.
-Image:genuFAp.jpg|Subject3.
+Image:Subj3_II.|Subject3.
 </gallery>

@@ Line 8: / Line 8: @@
 ==Key Investigators==
 * GE Research: Albert Montillo
-* Isomics: Steve Pieper
 <div style="margin: 20px;">
@@ Line 15: / Line 16: @@
 <h3>Objective</h3>
 Programmatically setup 3D Slicer to view data from different subjects while applying the same consistent view. Save screen image to PNG.
@@ Line 36: / Line 33: @@
 <h3>Progress</h3>
-Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
+The python script has been tested on folder with multiple subject subfolders. All subject folders use same file names for scene elements so that same MRML file works for all subjects. MRML scene need only be setup once, for one subject, then reused for each subject.
 </div>

@@ Line 46: / Line 46: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
+This work will be delivered as a python script.
 </div>

@@ Line 7: / Line 7: @@
 ==Key Investigators==
-* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
+* GE Research: Albert Montillo
-* Utah: Tom Fletcher, Ross Whitaker
+* Isomics: Steve Pieper
 <div style="margin: 20px;">
@@ Line 14: / Line 14: @@
 <h3>Objective</h3>
-We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
+Programmatically setup 3D Slicer to view data from different subjects while applying the same consistent view. Save screen image to PNG.
@@ Line 27: / Line 28: @@
 <h3>Approach, Plan</h3>
-Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
+Our approach is create a template MRML scene file and reuse it for each subject. MRML scene stores relative paths to items in the scene such as volumes. Python script is passed to Slicer to load dthe scene per subject and save image.<foo>.
 </div>