2013 Progress Report/Publications list - Revision history

Marianna at 17:14, 29 April 2013

2013-04-29T17:14:37Z

Marianna at 16:48, 29 April 2013

2013-04-29T16:48:12Z

Marianna at 19:47, 28 April 2013

2013-04-28T19:47:27Z

Marianna: /* Conference Reports */

2013-04-26T18:56:09Z

Conference Reports

Marianna at 18:55, 26 April 2013

2013-04-26T18:55:32Z

Marianna at 18:50, 26 April 2013

2013-04-26T18:50:01Z

Marianna: /* Conference Reports */

2013-04-26T18:10:29Z

Conference Reports

Marianna: /* Conference Reports */

2013-04-26T18:09:56Z

Conference Reports

Marianna: /* Conference Reports */

2013-04-26T18:07:40Z

Conference Reports

Marianna at 16:18, 26 April 2013

2013-04-26T16:18:55Z

@@ Line 244: / Line 244: @@
 #Blezek D.J., Miller J.V. Atlas Stratification. Med Image Anal. 2007 Oct;11(5):443-57. PMID: 17765003. PMCID: PMC2042991.
 #Gilmore J.H., Lin W., Corouge I., Vetsa Y.S., Smith J.K., Kang C., Gu H., Hamer R.A., Lieberman J.A., Gerig G. Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography. AJNR Am J Neuroradiol. 2007 Oct;28(9):1789-95. PMID: 17923457.
 #Pohl K.M., Fisher III J.W., Bouix S., Shenton M.E., McCarley R., Grimson W.E.L., Kikinis R., Wells III W.M. Using the Logarithm of Odds to Define a Vector Space on Probabilistic Atlases. Med Image Anal. 2007 Oct;11(5):465-77.  PMID: 17698403. PMCID: PMC2423493.
 #Taylor W.D., Macfall J.R., Gerig G., Krishnan R.R. Structural Integrity of the Uncinate Fasciculus in Geriatric Depression: Relationship with Age of Onset. Neuropsychiatr Dis Treat. 2007 Oct;3(5):669-74. PMID: 19300596. PMCID: PMC2656303.

@@ Line 64: / Line 64: @@
 #Voineskos A.N., Rajji T.K., Lobaugh N.J., Miranda D., Shenton M.E., Kennedy J.L., Pollock B.G., Mulsant B.H. Age-related Decline in White Matter Tract Integrity and Cognitive Performance: A DTI Tractography and Structural Equation Modeling Study. Neurobiol Aging. 2012 Jan;33(1):21-34. PMID: 20363050. PMCID: PMC2945445.
 #Fedorov A., Li X., Pohl K.M., Bouix S., Styner M., Addicott M., Wyatt C., Daunais J.B., Wells III W.M., Kikinis R. Atlas-Guided Segmentation of Vervet Monkey Brain MRI. Open Neuroimag J. 2011; 5:186–197. PMID: 22253661. PMCID: PMC3256578.
 #Looi J.C.L., Macfarlane M.D., Walterfang M., Styner M., Velakoulis D., Lätt J., Van Westen D., Nilsson C. Morphometric Analysis of Subcortical Structures in Progressive Supranuclear Palsy: <i>In vivo</i> Evidence of Neostriatal and Mesencephalic Atrophy. Psychiatry Res. 2011 Nov 30;194(2):163-75. PMID: 21899988. PMCID: PMC3204393.
 #Koven N.S., Roth R.M., Garlinghouse M.A., Flashman L.A., Saykin A.J. Regional Gray Matter Correlates of Perceived Emotional Intelligence. Soc Cogn Affect Neurosci. 2011 Oct;6(5):582-90. PMID: 20934987. PMCID: PMC3190210.
 #Lee J., Lankton S., Tannenbaum A. Object Tracking and Target Reacquisition Based on 3-D Range Data for Moving Vehicles. IEEE Trans Image Process. 2011 Oct;20(10):2912-24. PMID: 21486717.

@@ Line 600: / Line 600: @@
 #Shackleford J.A., Yang Q., Lourenço A.M., Shusharina N., Kandasamy N., Sharp G.C. Analytic Regularization of Uniform Cubic B-Spline Deformation Fields. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):122-9. PMID: 23286040.
 #Gholami B., Norton I., Tannenbaum A.R., Agar N.Y.R. Recursive Feature Elimination for Brain Tumor Classification using Desorption Electrospray Ionization Mass Spectrometry Imaging. Conf Proc IEEE Eng Med Biol Soc. 2012;2012:5258-61. PMID: 23367115.
 #Wang B., Prastawa M., Awate S.P., Irimia A., Chambers M.C., Vespa P.M., Van Horn J.D., Gerig G. Segmentation of Serial MRI of TBI patients using Personalized Atlas Construction and Topological Change Estimation. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 1152-1155.
 #Farzinfar M., Dietrich C., Smith R., Li Y., Gupta A., Liu Z., Styner M. Entropy Based DTI Quality Control via Regional Orientation Distribution. Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2012; 22–26.  PMID: 23595508. PMCID: PMC3625986.

@@ Line 588: / Line 588: @@
 #Matsui J., Kim E.Y., Magnotta V., Johnson H. Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.
 #Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
-#Shackleford J., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
+#Shackleford J.A., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
 #Durrleman S., Prastawa M., Korenberg J.R., Joshi S., Trouvé A., Gerig G. Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30. PMID: 23286134.
 #Awate S., Zhu P., Whitaker A.R.T. How Many Templates Does It Take for a Good  Segmentation? Error Analysis in Multiatlas Segmentation as a Function of Database Size. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):103-114.

@@ Line 311: / Line 311: @@
 #Matsui J., Kim E.Y., Magnotta V., Johnson H. Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.
 #Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
-#Shackleford J., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on IGMDP.
+#Shackleford J.A., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
 #Durrleman S., Prastawa M., Korenberg J.R., Joshi S., Trouvé A., Gerig G. Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30. PMID: 23286134.
 #Awate S., Zhu P., Whitaker A.R.T. How Many Templates Does It Take for a Good  Segmentation? Error Analysis in Multiatlas Segmentation as a Function of Database Size. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):103-114.
@@ Line 588: / Line 588: @@
 #Matsui J., Kim E.Y., Magnotta V., Johnson H. Derivation of Fiber Tracts Representing the Corticospinal Tract using Anatomical Landmarks. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). DTI Tractography Challenge Workshop.
 #Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
-#Shackleford J., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on IGMDP.
+#Shackleford J., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Image-Guidance and Multimodal Dose Planning in Radiation Therapy.
 #Durrleman S., Prastawa M., Korenberg J.R., Joshi S., Trouvé A., Gerig G. Topology Preserving Atlas Construction from Shape Data without Correspondence using Sparse Parameters. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 3):223-30. PMID: 23286134.
 #Awate S., Zhu P., Whitaker A.R.T. How Many Templates Does It Take for a Good  Segmentation? Error Analysis in Multiatlas Segmentation as a Function of Database Size. Int Conf Med Image Comput Comput Assist Interv. 2012;15(Pt 2):103-114.

@@ Line 3: / Line 3: @@
 #Jones K.B., Datar M., Ravichandran S., Jin H., Jurrus E., Whitaker R., Capecchi M.R. Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas. J Orthop Res. 2013 Apr;31(4):651-7. PMID: 23192691.
 #Lou Y., Niu T., Jia X., Vela P.A., Zhu L., Tannenbaum A.R. Joint CT/CBCT Deformable Registration and CBCT Enhancement for Cancer Radiotherapy. Med Image Anal. 2013 Apr;17(3):387-400. PMID: 23433756.
-#<font color=maroon>Paniagua B., Lyall A., Berger J-B., Vachet C., Hamer R.M., Woolson S., Lin W., Gilmore J., Styner M. Lateral Ventricle Morphology Analysis via Mean Latitude Axis. Proc Soc Photo Opt Instrum Eng. 2013 Mar 29;8672. PMID: 23606800. PMCID: PMC3630372.</font>
+#Matsui J.T., Vaidya J.G., Johnson H.J., Magnotta V.A., Long J.D., Mills J.A., Lowe M.J., Sakaie K.E., Rao S.M., Smith M.M., Paulsen J.S. Diffusion Weighted Imaging of Prefrontal Cortex in Prodromal Huntington’s Disease. Hum Brain Mapp. 2013 Apr 9. PMID: 23568433.
 #Egger J., Kapur T., Fedorov A., Pieper S., Miller J.V., Veeraraghavan H., Freisleben B., Golby A.J., Nimsky C., Kikinis R. GBM Volumetry using the 3D Slicer Medical Image Computing Platform. Sci Rep. 2013 Mar 4;3:1364. PMID: 23455483. PMCID: PMC3586703.
 #Sadeghi N., Prastawa M., Fletcher P.T., Wolff J., Gilmore J.H., Gerig G. Regional Characterization of Longitudinal DT-MRI to Study White Matter Maturation of the Early Developing Brain. Neuroimage. 2013 Mar;68:236-47. PMID: 23235270.
@@ Line 49: / Line 50: @@
 #Irimia A., Chambers M.C., Torgerson C.M., Van Horn J.D. Circular Representation of Human Cortical Networks for Subject and Population-level Connectomic Visualization. Neuroimage. 2012 Apr 2;60(2):1340-51. PMID: 22305988. PMCID: PMC3594415.
 #Shusharina N., Sharp G.C. Analytic Regularization for Landmark-based Image Registration. Phys Med Biol. 2012 Mar 21;57(6):1477-98. PMID: 22390947.
-#<font color=maroon>Gholami B., Bailey J.M., Haddad W.M., Tannenbaum A.R. Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. IEEE Trans Control Syst Technol. 2012 March ; 20(5): 1343–1350. PMCID: PMC3633236.</font>
+#Gholami B., Bailey J.M., Haddad W.M., Tannenbaum A.R. Clinical Decision Support and Closed-Loop Control for Cardiopulmonary Management and Intensive Care Unit Sedation Using Expert Systems. IEEE Trans Control Syst Technol. 2012 March ; 20(5): 1343–1350. PMCID: PMC3633236.
 #Irimia A., Chambers M.C., Torgerson C.M., Filippou M., Hovda D.A., Alger J.R., Gerig G., Toga A.W., Vespa P.M., Kikinis R., Van Horn J.D. Patient-tailored Connectomics Visualization for the Assessment of White Matter Atrophy in Traumatic Brain Injury. Front. Neur. 3(10):1-21. PMID: 22363313. PMCID: PMC3275792.
 #Irimia A., Van Horn J.D., Halgren E. Source Cancellation Profiles of Electroencephalography and Magnetoencephalography. Neuroimage. 2012 Feb 1;59(3):2464-74. PMID: 21959078. PMCID: PMC3254784.
@@ Line 531: / Line 532: @@
 #Jones K.B., Datar M., Ravichandran S., Jin H., Jurrus E., Whitaker R., Capecchi M.R. Toward an Understanding of the Short Bone Phenotype Associated with Multiple Osteochondromas. J Orthop Res. 2013 Apr;31(4):651-7. PMID: 23192691.
 #Lou Y., Niu T., Jia X., Vela P.A., Zhu L., Tannenbaum A.R. Joint CT/CBCT Deformable Registration and CBCT Enhancement for Cancer Radiotherapy. Med Image Anal. 2013 Apr;17(3):387-400. PMID: 23433756.
-#<font color=maroon>Paniagua B., Lyall A., Berger J-B., Vachet C., Hamer R.M., Woolson S., Lin W., Gilmore J., Styner M. Lateral Ventricle Morphology Analysis via Mean Latitude Axis. Proc Soc Photo Opt Instrum Eng. 2013 Mar 29;8672. PMID: 23606800. PMCID: PMC3630372.</font>
+#Matsui J.T., Vaidya J.G., Johnson H.J., Magnotta V.A., Long J.D., Mills J.A., Lowe M.J., Sakaie K.E., Rao S.M., Smith M.M., Paulsen J.S. Diffusion Weighted Imaging of Prefrontal Cortex in Prodromal Huntington’s Disease. Hum Brain Mapp. 2013 Apr 9. PMID: 23568433.
 #Egger J., Kapur T., Fedorov A., Pieper S., Miller J.V., Veeraraghavan H., Freisleben B., Golby A.J., Nimsky C., Kikinis R. GBM Volumetry using the 3D Slicer Medical Image Computing Platform. Sci Rep. 2013 Mar 4;3:1364. PMID: 23455483. PMCID: PMC3586703.
 #Sadeghi N., Prastawa M., Fletcher P.T., Wolff J., Gilmore J.H., Gerig G. Regional Characterization of Longitudinal DT-MRI to Study White Matter Maturation of the Early Developing Brain. Neuroimage. 2013 Mar;68:236-47. PMID: 23235270.

@@ Line 307: / Line 307: @@
 #Vardhan A., Prastawa M., Sharma A., Piven J., Gerig G. Modeling Longitudinal MRI Changes in Populations Using a Localized, Information-Theoretic Measure of Contrast. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
 #Sharma A., Fletcher P.T., Gilmore J.H., Escolar M.L., Vardhan A., Gupta A., Styner M., Gerig G. Spatiotemporal Modeling of Discrete-Time Distribution-Valued Data Applied to DTI Tract Evolution in Infant Neurodevelopment. Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2013;
 #Shackleford J.A., Kandasamy N., Sharp G.C. Accelerating MI-based B-spline Registration using CUDA Enabled GPUs. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on Data- and Compute-Intensive Clinical and Translational Imaging Applications.
 #Shackleford J., Shusharina N., Verberg J., Warmerdam G., Winey B., Neuner M., Steininger P., Arbisser A., Golland P., Lou Y., Paganelli C., Peroni M., Riboldi M., Baroni G., Zaffino P., Spadea M.F., Apte A., Saleh Z., Deasy J.O., Mori S., Kandasamy N., Sharp G.C. Plastimatch 1.6 – Current Capabilities and Future Directions. Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS). Workshop on IGMDP.