2013 Project Week:ColorHierarchies - Revision history

Naucoin: /* Project Description */

2013-02-13T19:00:21Z

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2013-01-10T15:29:51Z

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2013-01-08T21:58:59Z

2013-01-08T21:40:08Z

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2013-01-08T18:19:29Z

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2013-01-05T00:45:25Z

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2012-12-27T22:10:18Z

2012-12-27T21:24:05Z

2012-12-07T16:25:46Z

2012-12-07T16:23:42Z

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 *** also checked in new ModelMaker code using the fix
 ** To Do: create template model hierarchies for more color files and incorporate them into the Slicer repository
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 ** in ModelMaker.cxx import the .mrml file with the extra model hierarchy nodes
 *** BUG: the parent node references aren't updated when importing this on top of the mini scene that Slicer passes to the model maker, which has a model hierarchy node with id number 1 while the color hierarchy mrml file has the same id
 ** search for model hierarchy nodes with names that match the color names of the models and set the associated node id on them
 ** in  vtkSlicerApplicationLogic::ProcessReadSceneData it only reads in model hierarchies  that are children of the passed in model hierarchy, it doesn't recurse, so the models are not read in since they're too many levels down
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 <gallery>
 Image:PW-SLC2013.png|[[2013_Winter_Project_Week#Projects|Projects List]]
-<!--Image:yourimagehere.png| Image description-->
+Image:ColorHierarchyOutput.jpg | Output from the enhanced ModelMaker module
 </gallery>

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 *** BUG: the parent node references aren't updated when importing this on top of the mini scene that Slicer passes to the model maker, which has a model hierarchy node with id number 1 while the color hierarchy mrml file has the same id
 ** search for model hierarchy nodes with names that match the color names of the models and set the associated node id on them
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 <h3>Approach, Plan</h3>
-From Marianna:
+Approach
 ** start from the Head and Neck Atlas model hierarchy: http://www.na-mic.org/publications/item/view/2256
 ** she will provide a text file with the necessary description of the model hierarchy
 Plan:
 * create a data structure to save the new color table hierarchy (storable)
 ** extend the color table?
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 ** make sure leave the "sample" hierachy available as a base for multiple runs of the model maker
 * future plans: create color table hierarchies for all anatomic based color tables
+*alternately, craft a sample .mrml file with the desired model hiearchy, using the Model modules GUI, then pass the file to the model maker
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 * expand the mrml file that's passed to the model maker to include the full hierarchy and then fill it in
 ** associate the hierarhcy with a color node so it's saved/restored?
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 <h3>Progress</h3>
 * [[media:NeckAtlas2012-ColorHierarchy12-07-2012.doc|  Head and Neck Atlas 2012 Color Hierarchy text file]]
 * Discussed this project during the NA-MIC Eng tcon Dec 27th:
 **could think about a realtionship defining node to be the most general

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 * start from the Head and Neck Atlas model hierarchy: http://www.na-mic.org/publications/item/view/2256
 * she will provide a text file with the necessary description of the model hierarchy
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 Progress:
-*[http://wiki.na-mic.org/Wiki/index.php/File:HeadNeckAtlas2012-ColorHierarchy.doc First pass color hierarchy for head and neck atlas]
+* [[media:NeckAtlas2012-ColorHierarchy12-07-2012.doc|  Head and Neck Atlas 2012 Color Hierarchy text file]]
 http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week

← Older revision		Revision as of 16:23, 7 December 2012
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	* future plans: create color table hierarchies for all anatomic based color tables		* future plans: create color table hierarchies for all anatomic based color tables

		+	Progress:
		+	*[http://wiki.na-mic.org/Wiki/index.php/File:HeadNeckAtlas2012-ColorHierarchy.doc First pass color hierarchy for head and neck atlas]

	http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week		http://wiki.na-mic.org/Wiki/index.php/2013_Winter_Project_Week