2013 Project Week:PythonModules - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:21Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Dmwelch: /* Project Description */

2013-01-11T16:04:59Z

Project Description

Dmwelch: /* Key Investigators */

2013-01-11T16:01:48Z

Key Investigators

Dmwelch: /* TODO */

2013-01-11T16:00:29Z

TODO

Dmwelch: /* Project Description */

2013-01-11T15:57:33Z

Project Description

Dmwelch at 15:55, 7 January 2013

2013-01-07T15:55:47Z

Dmwelch: Created page with 'NOTOC Image:PW-SLC2013.png|Projects List Image:ScarSeg_EM.png‎| Scar tissue identification. ==Key Investigators=…'

2013-01-03T15:30:38Z

Created page with '__NOTOC__ <gallery> Image:PW-SLC2013.png|Projects List Image:ScarSeg_EM.png‎| Scar tissue identification. </gallery> ==Key Investigators=…'

New page

__NOTOC__
<gallery>
Image:PW-SLC2013.png|[[2013_Winter_Project_Week#Projects|Projects List]]
Image:ScarSeg_EM.png‎| Scar tissue identification.
</gallery>

==Key Investigators==

* LiangJia Zhu, Allen Tannenbaum, UAB
* Yi Gao, BWH
* Josh Cates, Rob MacLeod, SCI

==Project Description==

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* We are developing methods for identifying scar tissue from CARMA data. Our previous method demonstrates an effective identification ability for DE-MRI data. In this method, the intensity distribution inside the LA myocardial wall is modeled as a mixture of Gaussians. To improve the performance of this method, we will integrate the intensity information from the LA chamber into the overall identification procedure.
* We will discuss possible improvements for scar identification.
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
* Design an identification scheme using the LA intensity as a prior
* Test the method using CARMA data
* Deliver the implementation in CLI module.
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

@@ Line 27: / Line 27: @@
 <h3>Progress</h3>
 * JC has implemented and documented the steps required to install external Python packages into the Slicer environment
-** [[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Python_scripting#Resources|Slicer Wiki documentation]]
+** [[https://www.slicer.org/wiki/Documentation/Nightly/Developers/Python_scripting#Resources|Slicer Wiki documentation]]
 ==== TODO ====
 * Add the Python function <tt>install_distributions</tt> into the <tt>slicer.util</tt> module

@@ Line 26: / Line 26: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
-* JC has implemented and documented the steps required to install external Python packages into the Slicer environment [[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Python_scripting#Resources]]
+* JC has implemented and documented the steps required to install external Python packages into the Slicer environment
 ==== TODO ====
 * Add the Python function <tt>install_distributions</tt> into the <tt>slicer.util</tt> module

@@ Line 6: / Line 6: @@
 ==Key Investigators==
-* Dave Welch, UIowa SENAP
+* Dave Welch, University of Iowa SINAPSE
 ==Project Description==

@@ Line 26: / Line 26: @@
 * JC has implemented and documented the steps required to install external Python packages into the Slicer environment [[http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Python_scripting#Resources]]
 ==== TODO ====
-* Add the Python function <tt>install_distributions</tt> into the <tt>slicer.util</tt> module (rename to <tt>importExternalPythonModules()</tt> ?)
+* Add the Python function <tt>install_distributions</tt> into the <tt>slicer.util</tt> module
 * Add inclusion of distribute and pip installs to the CMake build (default: OFF)
 </div>
 </div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2013.png|[[2013_Winter_Project_Week#Projects|Projects List]]
 </gallery>
 ==Key Investigators==
-* LiangJia Zhu, Allen Tannenbaum, UAB
+* Dave Welch, UIowa SENAP
 ==Project Description==
@@ Line 16: / Line 13: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Objective</h3>
-* We are developing methods for identifying scar tissue from CARMA data. Our previous method demonstrates an effective identification ability for DE-MRI data. In this method, the intensity distribution inside the LA myocardial wall is modeled as a mixture of Gaussians. To improve the performance of this method, we will integrate the intensity information from the LA chamber into the overall identification procedure.
+* Adding Python modules into the Slicer environment is currently cumbersome and difficult to do.  With the growth of Python as a scientific research tool, Slicer should provide an easy mechanism for inclusion of Python modules on the fly.
-* We will discuss possible improvements for scar identification.
+* We will discuss with lead Slicer developers how to best implement a user-friendly approach to improve Python importing.  Our work will be tested and documented on the Slicer wiki.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Approach, Plan</h3>
-* Design an identification scheme using the LA intensity as a prior
+* Discussions with JC, Steve, Andrey, and interested Python programmers
-* Test the method using CARMA data
+* Document best approaches
-* Deliver the implementation in CLI module.
+* Implement work in Slicer 4.3
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">

2013 Project Week:PythonModules - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Dmwelch: /* Project Description */

Dmwelch: /* Key Investigators */

Dmwelch: /* TODO */

Dmwelch: /* Project Description */

Dmwelch at 15:55, 7 January 2013

Dmwelch: Created page with '__NOTOC__ Image:PW-SLC2013.png|Projects List Image:ScarSeg_EM.png‎| Scar tissue identification. ==Key Investigators=…'

Dmwelch: Created page with 'NOTOC Image:PW-SLC2013.png|Projects List Image:ScarSeg_EM.png‎| Scar tissue identification. ==Key Investigators=…'