2013 Summer Project Week:CARMA Visualization - Revision history

Sbengali at 14:16, 21 June 2013

2013-06-21T14:16:23Z

Sbengali at 03:23, 21 June 2013

2013-06-21T03:23:19Z

Sbengali: Added example image and progress

2013-06-21T03:18:41Z

Added example image and progress

Sbengali: Updated progress

2013-06-21T03:13:28Z

Updated progress

Sbengali at 02:43, 17 June 2013

2013-06-17T02:43:05Z

Sbengali at 02:42, 17 June 2013

2013-06-17T02:42:46Z

Sbengali at 16:44, 3 June 2013

2013-06-03T16:44:56Z

Sbengali: Created page with 'NOTOC Image:PW-MIT2012.png|Projects List ==Key Investigators== * Utah: Salma Bengali, Alan Morris, Brian Zenger, J…'

2013-05-24T17:54:10Z

Created page with '__NOTOC__ <gallery> Image:PW-MIT2012.png|Projects List </gallery> ==Key Investigators== * Utah: Salma Bengali, Alan Morris, Brian Zenger, J…'

New page

__NOTOC__
<gallery>
Image:PW-MIT2012.png|[[2013_Summer_Project_Week#Projects|Projects List]]
</gallery>

==Key Investigators==
* Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>
#Discuss with available Slicer experts on possible implementation of this feature
#Integrate the feature into Slicer

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>

</div>
</div>

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a Slicer feature.

==References==
*[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod
-[[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface]]
+[[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
 <div style="margin: 20px;">

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod
-[[File:Thresholded_example.png|center|300px|An example of a thresholded isosurface]]
+[[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface]]
 <div style="margin: 20px;">

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod
 <div style="margin: 20px;">
@@ Line 27: / Line 28: @@
 <h3>Progress</h3>
-We have discussed with Steve and Jim and have decided to write a loadable module in Slicer which will be able to display the regions of scar in the model of the endocardium wall. Regions of scar will be colored using scalars stored in the .vtk model file. Thresholding of the model will involve rewriting the .vtk file and generating a new isosurface in Slicer.
+We have discussed with Steve and Jim and have decided to write a loadable module in Slicer which will be able to display the regions of scar on the isosurface of the LA endocardium wall. Regions of scar will be colored using scalars stored in the .vtk model file. Thresholding of the model will involve rewriting the .vtk file and generating a new isosurface in Slicer. (See example of a thresholded isosurface above.)
 </div>

@@ Line 27: / Line 27: @@
 <h3>Progress</h3>
+We have discussed with Steve and Jim and have decided to write a loadable module in Slicer which will be able to display the regions of scar in the model of the endocardium wall. Regions of scar will be colored using scalars stored in the .vtk model file. Thresholding of the model will involve rewriting the .vtk file and generating a new isosurface in Slicer.
 </div>
@@ Line 34: / Line 34: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a Slicer feature.
+This work will be delivered to the NA-MIC Kit as a Slicer loadable module.
 ==References==
 *[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 19: / Line 19: @@
 <h3>Approach, Plan</h3>
-#Discuss with available Slicer experts on possible implementation of this feature
+#Discuss with available Slicer experts on possible options for implementation of this feature
 #Integrate the feature into Slicer

@@ Line 12: / Line 12: @@
 <h3>Objective</h3>
-* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.
+* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.
 </div>

@@ Line 1: / Line 1: @@
 __NOTOC__
 <gallery>
-Image:PW-MIT2012.png|[[2013_Summer_Project_Week#Projects|Projects List]]
+Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 </gallery>