2013 Summer Project Week:Deformable registration validation toolkit - Revision history

Fedorov at 03:14, 21 June 2013

2013-06-21T03:14:13Z

Gregsharp at 22:20, 20 June 2013

2013-06-20T22:20:33Z

Gregsharp: /* Key Investigators */

2013-06-20T18:54:23Z

Key Investigators

Gregsharp: /* Key Investigators */

2013-06-20T18:53:56Z

Key Investigators

Fedorov at 23:57, 5 June 2013

2013-06-05T23:57:45Z

Wangk at 19:14, 5 June 2013

2013-06-05T19:14:06Z

Gregsharp: /* Delivery Mechanism */

2013-06-03T14:09:50Z

Delivery Mechanism

Gregsharp at 14:09, 3 June 2013

2013-06-03T14:09:30Z

Gregsharp: Created page with 'NOTOC Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

2013-06-03T14:01:11Z

Created page with '__NOTOC__ <gallery> Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

New page

__NOTOC__
<gallery>
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
</gallery>

==Instructions for Use of this Template==
#Please create a new wiki page with an appropriate title for your project using the convention 2013_Summer_Project_Week:<Project Name>
#Copy the entire text of this page into the page created above
#Link the created page into the list of projects for the project event
#Delete this section from the created page
#Send an email to tkapur at bwh.harvard.edu if you are stuck

==Key Investigators==
* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
* Utah: Tom Fletcher, Ross Whitaker

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.

Our plan for the project week is to first try out <bar>,...

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.

</div>
</div>

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)

#ITK Module
#Slicer Module
##Built-in
##Extension -- commandline
##Extension -- loadable
#Other (Please specify)

==References==
*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

@@ Line 20: / Line 20: @@
 <h3>Approach, Plan</h3>
-Write plan here.
+* Review Andrey Fedorov's qualitative registration review
 </div>
 <div style="width: 40%; float: left;">

@@ Line 7: / Line 7: @@
 * MGH: Greg Sharp
 * PMH, Toronto: Kevin Wang
 <div style="margin: 20px;">

@@ Line 31: / Line 31: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a:
+This work will be delivered to the NA-MIC Kit as:
-#Extension -- python scripted
+* Extension -- python scripted
 ==References==

@@ Line 3: / Line 3: @@
 Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 Image:2013_Summer_Project_Week_Registration_Validation_1.jpg|SIFT features
 </gallery>

@@ Line 25: / Line 25: @@
 </div>
 <div style="width: 40%; float: left;">
 <h3>Progress</h3>
 </div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 </gallery>
 ==Key Investigators==
-* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
+* MGH: Greg Sharp
 <div style="margin: 20px;">
@@ Line 21: / Line 11: @@
 <h3>Objective</h3>
-We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
+We are developing tools for helping users assess the accuracy of deformable image registration.
 </div>
@@ Line 33: / Line 18: @@
 <h3>Approach, Plan</h3>
+Write plan here.
 </div>
@@ Line 43: / Line 25: @@
 <h3>Progress</h3>
 </div>
@@ Line 51: / Line 31: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a (please select the appropriate options by noting YES against them below)
+This work will be delivered to the NA-MIC Kit as a:
-#ITK Module
+#Extension -- python scripted
 ==References==

2013 Summer Project Week:Deformable registration validation toolkit - Revision history

Fedorov at 03:14, 21 June 2013

Gregsharp at 22:20, 20 June 2013

Gregsharp: /* Key Investigators */

Gregsharp: /* Key Investigators */

Fedorov at 23:57, 5 June 2013

Wangk at 19:14, 5 June 2013

Gregsharp: /* Delivery Mechanism */

Gregsharp at 14:09, 3 June 2013

Gregsharp: Created page with '__NOTOC__ Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

Gregsharp: Created page with 'NOTOC Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'