2013 Summer Project Week:Fibrosis analysis - Revision history

Ygao: /* Key Investigators */

2013-06-21T13:32:36Z

Key Investigators

Ygao: /* References */

2013-06-18T21:19:14Z

References

Ygao: /* References */

2013-06-18T21:18:40Z

References

Ygao: update figure

2013-05-26T18:34:44Z

update figure

Ygao: /* Key Investigators */

2013-05-26T17:39:22Z

Key Investigators

Ygao: spell checked

2013-05-26T17:39:05Z

spell checked

Ygao: /* Key Investigators */ and approaches

2013-05-26T17:38:16Z

Key Investigators: and approaches

Ygao: /* References */

2013-05-26T17:25:38Z

References

Ygao: /* References */

2013-05-26T17:23:43Z

References

Ygao: /* Delivery Mechanism */

2013-05-26T17:22:28Z

Delivery Mechanism

← Older revision		Revision as of 13:32, 21 June 2013
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	<h3>Progress</h3>		<h3>Progress</h3>
−	~~C++ code~~ using ~~ITK~~ and ~~VTK is finished.~~	+	* Discussion with Josh about similar work. CARMA has also work on this using particle based shape analysis on surface. This module uses volumetric OMT for the wall volume.
		+	* Next
		+	** validation on particle/OMT based methods
		+	** Test Extension and then Nightly build

@@ Line 40: / Line 40: @@
 ==References==
 * [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]
-* Y Gao, Y Rathi, S Bouix, A Tannenbaum; Filtering in the Diffeomorphism Group and the Registration of Point Sets; IEEE Transactions on Image Processing 21 (10), 4383--4396
+* Y Gao, Y Rathi, S Bouix, A Tannenbaum; ''Filtering in the Diffeomorphism Group and the Registration of Point Sets''; IEEE Transactions on Image Processing 21 (10), 4383--4396
-* Y. Gao and S. Bouix, “Synthesis of realistic subcortical anatomy with known surface deformations,” in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.
+* Y. Gao and S. Bouix, ''Synthesis of realistic subcortical anatomy with known surface deformations''; in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.

@@ Line 40: / Line 40: @@
 ==References==
 * [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]
 * Y. Gao and S. Bouix, “Synthesis of realistic subcortical anatomy with known surface deformations,” in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
-Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+Image:FibrosisPval20130526.png|p-value between DCE-MRI between cured patiens and AFib recurrent patient.
 </gallery>

← Older revision		Revision as of 17:39, 26 May 2013
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	<h3>Progress</h3>		<h3>Progress</h3>
−	C++ code using ITK and VTK ~~has been available~~.	+	C++ code using ITK and VTK is finished.

@@ Line 14: / Line 14: @@
 <h3>Objective</h3>
-Among the AFib patients underwent RF ablation, the relateive high AFib recurrence rate is a concern. The correlation between the cure/recurrence ratio with the distribution of the fibrosis would provide insight on the disease assessment and treatment planning.
+Among the AFib patients underwent RF ablation, the relative high AFib recurrence rate is a concern. The correlation between the cure/recurrence ratio with the distribution of the fibrosis would provide insight on the disease assessment and treatment planning.
@@ Line 22: / Line 22: @@
 <h3>Approach, Plan</h3>
-The fibrosis distributions on the left atrium wall is imaged using the dynamic contrast enhanced MRI. Distributed on different anotomical structures, they are considered as "mass" defined on different domains. Under the framework of the optimal mass transport (OMT), the masses are transported to a common domain where the statistical analysis can then be applied. The significant different regions are then characterized by the low-p-value regions.
+The fibrosis distributions on the left atrium wall is imaged using the dynamic contrast enhanced MRI. Distributed on different anatomical structures, they are considered as "mass" defined on different domains. Under the framework of the optimal mass transport (OMT), the masses are transported to a common domain where the statistical analysis can then be applied. The significant different regions are then characterized by the low-p-value regions.
 </div>

@@ Line 8: / Line 8: @@
 ==Key Investigators==
-* BWH: Yi Gao, Ron Kikinis
+* Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum
 <div style="margin: 20px;">
@@ Line 16: / Line 14: @@
 <h3>Objective</h3>
+Among the AFib patients underwent RF ablation, the relateive high AFib recurrence rate is a concern. The correlation between the cure/recurrence ratio with the distribution of the fibrosis would provide insight on the disease assessment and treatment planning.
@@ Line 28: / Line 22: @@
 <h3>Approach, Plan</h3>
+The fibrosis distributions on the left atrium wall is imaged using the dynamic contrast enhanced MRI. Distributed on different anotomical structures, they are considered as "mass" defined on different domains. Under the framework of the optimal mass transport (OMT), the masses are transported to a common domain where the statistical analysis can then be applied. The significant different regions are then characterized by the low-p-value regions.
 </div>
@@ Line 35: / Line 29: @@
 <h3>Progress</h3>
+C++ code using ITK and VTK has been available.

← Older revision		Revision as of 17:25, 26 May 2013
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	==References==		==References==
−	*[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]	+	* [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]
		+	* Y. Gao and S. Bouix, “Synthesis of realistic subcortical anatomy with known surface deformations,” in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.
		+	* T. Riklin-Raviv, Y. Gao, J. Levitt, and S. Bouix, “Statistical shape analysis for population studies via level-set based shape morphing,” in ECCV Workshop on Non-Rigid Shape Analysis and Deformable Image Alignment, 2012, pp. 42–51.

← Older revision		Revision as of 17:23, 26 May 2013
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	==References==		==References==
		+	*[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 43: / Line 43: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a loadable Commandline extension and an Editor effect.
+This work will be delivered to the NA-MIC Kit as a commandline extension.
 ==References==