https://www.na-mic.org/w/index.php?action=history&feed=atom&title=2013_Summer_Project_Week%3AProstate_radiotherapy_DICOM_communication
2013 Summer Project Week:Prostate radiotherapy DICOM communication - Revision history
2026-04-12T21:19:38Z
Revision history for this page on the wiki
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https://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication&diff=82679&oldid=prev
Fedorov: /* Key Investigators */
2013-06-21T13:51:22Z
<p><span dir="auto"><span class="autocomment">Key Investigators</span></span></p>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* BWH: Andrey Fedorov, Emily Neubauer-Sugar, Alireza Mehrtash</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* BWH: Andrey Fedorov, Emily Neubauer-Sugar, Alireza Mehrtash</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Queens: Csaba Pinter</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Queens: Csaba Pinter</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* MGH: Greg Sharp</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Iowa: Hans Johnson, Kent Williams</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h3>Progress</h3></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h3>Progress</h3></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Oncentra generated DICOM US can be read by Slicer, but only using nightly build (it looks like somehow nightly build is using ITK with DCMTK to read DICOM, and local builds use GDCM - this was confirmed on Mac and Windows)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">** the issue in GDCM is that for US modality, it expects PixelSpacing to be in a different tag</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Oncentra generated DICOM RT can be read by SlicerRT</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Plastimatch standalone tools can create RT contours, but at the moment cannot reference image UIDs that correspond to 8-bit images (Plastimatch can only read images that have 16 bits allocated)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">** US was converted to "CT" 16-bit, corresponding RT contours created </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* we will test the import of the generated datasets into Oncentra soon</ins></div></td></tr>
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Fedorov
https://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication&diff=82579&oldid=prev
Fedorov at 12:12, 21 June 2013
2013-06-21T12:12:26Z
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:12, 21 June 2013</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">Image:PW-MIT2013-Oncentra-SlicerRT.png|Oncentra test dataset in Slicer</ins></div></td></tr>
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Fedorov
https://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication&diff=81908&oldid=prev
Tkapur: /* Key Investigators */
2013-06-17T15:32:33Z
<p><span dir="auto"><span class="autocomment">Key Investigators</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:32, 17 June 2013</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Key Investigators==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Key Investigators==</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* BWH: Andrey Fedorov, Emily Neubauer-Sugar</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* BWH: Andrey Fedorov, Emily Neubauer-Sugar<ins class="diffchange diffchange-inline">, Alireza Mehrtash</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Queens: Csaba Pinter</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* Queens: Csaba Pinter</div></td></tr>
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Tkapur
https://www.na-mic.org/w/index.php?title=2013_Summer_Project_Week:Prostate_radiotherapy_DICOM_communication&diff=81863&oldid=prev
Fedorov: Created page with '__NOTOC__ <gallery> Image:PW-MIT2013.png|Projects List </gallery> ==Key Investigators== * BWH: Andrey Fedorov, Emily Neubauer-Sugar * Quee…'
2013-06-17T13:34:15Z
<p>Created page with '__NOTOC__ <gallery> Image:PW-MIT2013.png|<a href="/wiki/2013_Summer_Project_Week#Projects" title="2013 Summer Project Week">Projects List</a> </gallery> ==Key Investigators== * BWH: Andrey Fedorov, Emily Neubauer-Sugar * Quee…'</p>
<p><b>New page</b></p><div>__NOTOC__<br />
<gallery><br />
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]<br />
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==Key Investigators==<br />
* BWH: Andrey Fedorov, Emily Neubauer-Sugar<br />
* Queens: Csaba Pinter<br />
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<br />
<h3>Objective</h3><br />
Our goal is to establish the capability to (1) import and display reconstructed US data and RT structures from Oncentra Prostate 4.1 system into Slicer; (2) create in Slicer multi-slice DICOM US and/or MR datasets, and DICOM RT datasets that can be imported and interpreted correctly by the Oncentra system.<br />
</div><br />
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<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Plan</h3><br />
<br />
* We will use the testing datasets provided with Oncentra Prostate 4.1 to test data import in Slicer and examine the specifics of DICOM structures. <br />
* SlicerRT extensions will be used to load Oncentra RT test datasets into Slicer<br />
* Slicer/SlicerRT/Plastimatch will be evaluated to create imaging and RT datasets, which we will attempt to import into Oncentra.<br />
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<div style="width: 40%; float: left;"><br />
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<h3>Progress</h3><br />
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</div><br />
</div><br />
<br />
==References==<br />
* [http://www.nucletron.com/en/ProductsAndSolutions/Pages/Real-timeProstateBrachytherapy.aspx Nucletron Oncentra]</div>
Fedorov