2013 Summer Project Week:SegmentationAidedRegistration - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:22Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Ygao: /* Delivery Mechanism */

2013-06-19T12:40:40Z

Delivery Mechanism

Ygao: /* References */

2013-06-18T21:19:28Z

References

Ygao: /* References */

2013-06-18T21:18:21Z

References

Ygao: /* Delivery Mechanism */

2013-06-18T21:17:21Z

Delivery Mechanism

Ygao: /* Key Investigators */

2013-06-18T21:17:04Z

Key Investigators

Ygao: figures updated

2013-06-18T21:13:58Z

figures updated

Ygao: init with template

2013-06-18T21:08:06Z

init with template

New page

__NOTOC__
<gallery>
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
Image:FibrosisPval20130526.png|p-value between DCE-MRI between cured patiens and AFib recurrent patient.
</gallery>

==Key Investigators==
* Yi Gao, LiangJia Zhu, Josh Cates, Rob MacLeod, Sylvain Bouix, Ron Kikinis, Allen Tannenbaum

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
Among the AFib patients underwent RF ablation, the relative high AFib recurrence rate is a concern. The correlation between the cure/recurrence ratio with the distribution of the fibrosis would provide insight on the disease assessment and treatment planning.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>
The fibrosis distributions on the left atrium wall is imaged using the dynamic contrast enhanced MRI. Distributed on different anatomical structures, they are considered as "mass" defined on different domains. Under the framework of the optimal mass transport (OMT), the masses are transported to a common domain where the statistical analysis can then be applied. The significant different regions are then characterized by the low-p-value regions.

</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
C++ code using ITK and VTK is finished.

</div>
</div>

==Delivery Mechanism==

This work will be delivered to the NA-MIC Kit as a commandline extension.

==References==
* [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]
* Y. Gao and S. Bouix, “Synthesis of realistic subcortical anatomy with known surface deformations,” in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.
* T. Riklin-Raviv, Y. Gao, J. Levitt, and S. Bouix, “Statistical shape analysis for population studies via level-set based shape morphing,” in ECCV Workshop on Non-Rigid Shape Analysis and Deformable Image Alignment, 2012, pp. 42–51.

@@ Line 38: / Line 38: @@
 This work has been delivered to the NA-MIC Kit as a commandline extension. See module page at:
-http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/SegmentationAidedRegistration
+https://www.slicer.org/wiki/Documentation/Nightly/Modules/SegmentationAidedRegistration
 ==References==
 * Y Gao, Y Rathi, S Bouix, A Tannenbaum; ''Filtering in the Diffeomorphism Group and the Registration of Point Sets''; IEEE Transactions on Image Processing 21 (10), 4383--4396
 * [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 37: / Line 37: @@
 ==Delivery Mechanism==
-This work has been delivered to the NA-MIC Kit as a commandline extension.
+This work has been delivered to the NA-MIC Kit as a commandline extension. See module page at:
 ==References==
 * Y Gao, Y Rathi, S Bouix, A Tannenbaum; ''Filtering in the Diffeomorphism Group and the Registration of Point Sets''; IEEE Transactions on Image Processing 21 (10), 4383--4396
 * [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 40: / Line 40: @@
 ==References==
-* Y Gao, Y Rathi, S Bouix, A Tannenbaum; Filtering in the Diffeomorphism Group and the Registration of Point Sets; IEEE Transactions on Image Processing 21 (10), 4383--4396
+* Y Gao, Y Rathi, S Bouix, A Tannenbaum; ''Filtering in the Diffeomorphism Group and the Registration of Point Sets''; IEEE Transactions on Image Processing 21 (10), 4383--4396
 * [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

← Older revision		Revision as of 21:18, 18 June 2013
Line 40:		Line 40:

	==References==		==References==
		+	* Y Gao, Y Rathi, S Bouix, A Tannenbaum; Filtering in the Diffeomorphism Group and the Registration of Point Sets; IEEE Transactions on Image Processing 21 (10), 4383--4396
	* [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]		* [http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]
−	* Y. Gao and S. Bouix, “Synthesis of realistic subcortical anatomy with known surface deformations,” in MICCAI Workshop on Mesh Processing in Medical Image Analysis, 2012, pp. 80–88.
−	* T. Riklin-Raviv, Y. Gao, J. Levitt, and S. Bouix, “Statistical shape analysis for population studies via level-set based shape morphing,” in ECCV Workshop on Non-Rigid Shape Analysis and Deformable Image Alignment, 2012, pp. 42–51.

@@ Line 16: / Line 16: @@
 <h3>Objective</h3>
-Among the AFib patients underwent RF ablation, the relative high AFib recurrence rate is a concern. The correlation between the cure/recurrence ratio with the distribution of the fibrosis would provide insight on the disease assessment and treatment planning.
+When registering two images, sometime we want some specific regions in the two images to be particularly accurately matched.
 </div>
@@ Line 24: / Line 23: @@
 <h3>Approach, Plan</h3>
-The fibrosis distributions on the left atrium wall is imaged using the dynamic contrast enhanced MRI. Distributed on different anatomical structures, they are considered as "mass" defined on different domains. Under the framework of the optimal mass transport (OMT), the masses are transported to a common domain where the statistical analysis can then be applied. The significant different regions are then characterized by the low-p-value regions.
+We use the segmentation of the target region to aided the registration.
 </div>
@@ Line 31: / Line 29: @@
 <h3>Progress</h3>
-C++ code using ITK and VTK is finished.
+Extension in nightly build. Can be installed from Extension manager.

@@ Line 1: / Line 1: @@
 __NOTOC__
-<gallery>
+<gallery perrow="5">
 Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
-Image:FibrosisPval20130526.png|p-value between DCE-MRI between cured patiens and AFib recurrent patient.
+Image:AfibBeforeRegistrationSmall.png|Two images (3D) to be registered.
 </gallery>