2014 Project Week:LAFibrosisVisualizationModule - Revision history

Sbengali at 02:19, 10 January 2014

2014-01-10T02:19:45Z

Sbengali at 02:19, 10 January 2014

2014-01-10T02:19:21Z

Sbengali: Added progress

2014-01-10T02:19:04Z

Added progress

Cates: /* Key Investigators */

2014-01-06T19:56:26Z

Key Investigators

Cates at 23:28, 20 December 2013

2013-12-20T23:28:47Z

Cates: Created page with 'NOTOC Image:PW-SLC2014.png|Projects List ==Key Investigators== ==Project Description==
Projects List </gallery> ==Key Investigators== ==Project Description== <div style="margin: 20px;…'

New page
NOTOC
<gallery>
Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]]
</gallery>

==Key Investigators==

==Project Description==

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>
*
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
*
</div>
</div>

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Josh Cates
-[[File:LAFibrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
+[[File:LAFibrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold, White: Highest intensity]]
 <div style="margin: 20px;">

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Josh Cates
-[[File:LAFIbrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
+[[File:LAFibrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
 <div style="margin: 20px;">

@@ Line 7: / Line 7: @@
 * Utah: Salma Bengali, Josh Cates
-[[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
+[[File:LAFIbrosisVis2.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
 <div style="margin: 20px;">
@@ Line 13: / Line 13: @@
 <h3>Objective</h3>
-* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps.
+* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps. We would also like to add the calculation of the percent of scar in the left atrium wall.
 </div>
@@ Line 27: / Line 27: @@
 <h3>Progress</h3>
+# We have discussed with Nicole and have decided to add a custom color map that will be included with our extension. An example of what the wall model will look like is shown above.
 </div>
 </div>
@@ Line 33: / Line 34: @@
 ==Delivery Mechanism==
-This work will be delivered to the NA-MIC Kit as a Slicer loadable module.
+This work will be added to what is already available as a Slicer loadable module.
 ==References==
 *[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP]

@@ Line 13: / Line 13: @@
 <h3>Objective</h3>
-* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.
+* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. We have a preliminary module for visualization of scar / fibrosis, but need to expand with additional color maps.
 </div>

@@ Line 5: / Line 5: @@
 ==Key Investigators==
-==Project Description==
+[[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]]
 <div style="margin: 20px;">
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Objective</h3>
+* The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Approach, Plan</h3>
+# Build slicer module for visualization of (1) fibrosis and (2) scar with custom color maps
 </div>
-<div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
-−
 </div>
 </div>