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2014 Project Week:Processing Pipelines - Revision history
2026-05-19T16:33:10Z
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Rameshvs: /* Project Description */
2014-01-10T16:01:35Z
<p><span dir="auto"><span class="autocomment">Project Description</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 16:01, 10 January 2014</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We have developed simple, very lightweight software for building processing pipelines: <br /></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We have developed simple, very lightweight software for building processing pipelines: <br /></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://www.github.com/rameshvs/medical-imaging-pipelines <br /></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>https://www.github.com/rameshvs/medical-imaging-pipelines <br /></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>At the project week, we plan to finish building basic visualization of pipelines and a framework for making pipeline output easily visualizable in tools like Slicer.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>At the project week, we plan to finish building basic visualization of pipelines and a framework for making pipeline output easily visualizable in tools like Slicer<ins class="diffchange diffchange-inline">. <br /></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">This system is meant to be a more lightweight alternative to existing tools such as nipype (http://nipy.org/nipype/): nipype provides a broad range of features but requires learning the intricacies of its system. Our system is meant to provide the core subset of those features, but in turn will be much simpler to learn, use, and work with</ins>.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h3>Progress</h3></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><h3>Progress</h3></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* Built better visualization (see screenshot)</ins></div></td></tr>
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Rameshvs
https://www.na-mic.org/w/index.php?title=2014_Project_Week:Processing_Pipelines&diff=84493&oldid=prev
Rameshvs: Created page with '__NOTOC__ <gallery> Image:PW-SLC2014.png|Projects List Image:Pipeline_visualization_sketch.png| Visualization of pipeline from code </ga…'
2014-01-06T19:05:01Z
<p>Created page with '__NOTOC__ <gallery> Image:PW-SLC2014.png|<a href="/wiki/2014_Winter_Project_Week#Projects" title="2014 Winter Project Week">Projects List</a> Image:Pipeline_visualization_sketch.png| Visualization of pipeline from code </ga…'</p>
<p><b>New page</b></p><div>__NOTOC__<br />
<br />
<gallery><br />
Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]]<br />
Image:Pipeline_visualization_sketch.png| Visualization of pipeline from code<br />
</gallery><br />
<br />
==Key Investigators==<br />
<br />
* Ramesh Sridharan, Adrian Dalca, Polina Golland, MIT<br />
<br />
==Project Description==<br />
<br />
<div style="margin: 20px;"><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Objective</h3><br />
We have developed simple, very lightweight software for building processing pipelines: <br /><br />
https://www.github.com/rameshvs/medical-imaging-pipelines <br /><br />
At the project week, we plan to finish building basic visualization of pipelines and a framework for making pipeline output easily visualizable in tools like Slicer.<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Approach, Plan</h3><br />
* Implement visualization (see screenshot)<br />
* Discuss wishlist for pipeline (come see me if you have any thoughts!)<br />
* Discuss MRML/MRB output for visualizing results in Slicer<br />
</div><br />
<div style="width: 27%; float: left; padding-right: 3%;"><br />
<h3>Progress</h3><br />
</div><br />
</div></div>
Rameshvs