2014 Summer Project Week:DRAMMS Slicer - Revision history

Pieper: /* Project Description */

2014-06-27T13:15:55Z

Project Description

Pieper at 13:11, 27 June 2014

2014-06-27T13:11:31Z

Pieper at 13:11, 27 June 2014

2014-06-27T13:11:15Z

Ouyangming at 15:34, 25 June 2014

2014-06-25T15:34:33Z

Ouyangming at 01:54, 24 June 2014

2014-06-24T01:54:26Z

Ouyangming: /* Project Description */

2014-06-23T18:52:35Z

Project Description

Ouyangming: /* Project Description */

2014-06-23T18:52:22Z

Project Description

Ouyangming: /* Project Description */

2014-06-23T18:51:38Z

Project Description

Ouyangming: /* References */

2014-06-23T18:35:16Z

References

Ouyangming: /* Project Description */

2014-06-23T18:34:55Z

Project Description

@@ Line 45: / Line 45: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
+* Decided that a first step would be to try running existing dramms executable through a wrapper script
 </div>
 </div>

@@ Line 3: / Line 3: @@
 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:Dramms-logo.png|[[http://www.cbica.upenn.edu/sbia/software/dramms/ |DRAMMS Website]]
-Image:DRAMMS-mockup-Screen_Shot_2014-06-27_at_8.58.25_AM.png DRAMMS UI build with python script
+Image:DRAMMS-mockup-Screen_Shot_2014-06-27_at_8.58.25_AM.png | DRAMMS UI build with python script
 </gallery>

@@ Line 3: / Line 3: @@
 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:Dramms-logo.png|[[http://www.cbica.upenn.edu/sbia/software/dramms/ |DRAMMS Website]]
 </gallery>

@@ Line 27: / Line 27: @@
-Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast registration (a journal article accepted pending minor revision) tasks.
+Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast [[https://drive.google.com/file/d/0B1RDNI9g7RfrTHhpU21semdYYjA/edit?usp=sharing DRAMMS_in_Breast_Registration]] registration tasks.
@@ Line 60: / Line 60: @@
 * [http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 Evaluation of DRAMMS in Across-Subject Cardiac Registration]
-* [Evaluation of DRAMMS in Longitudinal Breast Registration (a journal article accepted pending minor revision)]
+* [https://drive.google.com/file/d/0B1RDNI9g7RfrTHhpU21semdYYjA/edit?usp=sharing Evaluation of DRAMMS in Longitudinal Breast Registration]

@@ Line 52: / Line 52: @@
 * [http://www.sciencedirect.com/science/article/pii/S1361841510000940 DRAMMS Algorithm]
-* [http://www.cbica.upenn.edu/sbia/software/dramms/ DRAMMS Software]
+* [http://www.cbica.upenn.edu/sbia/software/dramms/ DRAMMS Software Website]
 * [http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 Evaluation of DRAMMS in Across-Subject Brain Registration]

@@ Line 25: / Line 25: @@
 * study of early-life longitudinal neuro-deveolopment;
 * maintenance of 4D segmentation consistency.
 Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast registration (a journal article accepted pending minor revision) tasks.

@@ Line 18: / Line 18: @@
 [[http://www.cbica.upenn.edu/sbia/software/dramms/ DRAMMS]] is a general-purpose, fully-automated, deformable image registration algorithm and software package. It was designed for '''2D-to-2D''' and '''3D-to-3D''' cross-subject, longitudinal, multi-modal registration tasks, and has been recently extended for '''spatial-temporal (4D)''' registration and '''population-wise''' registration. Some typical applications include:
 * atlas construction in a population (infants, neonates, adults, ...);
 * multi-atlas based structure segmentation (brain, prostate, ...);
 * multi-modal registration (we had some success in histology-MRI registration of the prostate and mouse brain, looking for data for validation);
-* registration under a partial loss of correspondences(such as tumor/lesion-bearing images to normal-appearance images).
+* registration under a partial loss of correspondences(such as tumor/lesion-bearing images to normal-appearance images);
+* quantification of 4D tumor changes;
 Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast registration (a journal article accepted pending minor revision) tasks.

← Older revision		Revision as of 18:35, 23 June 2014
Line 57:		Line 57:
	* [http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 Evaluation of DRAMMS in Across-Subject Cardiac Registration]		* [http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 Evaluation of DRAMMS in Across-Subject Cardiac Registration]

−	* [Evaluation of DRAMMS in Longitudinal Breast Registration]	+	* [Evaluation of DRAMMS in Longitudinal Breast Registration (a journal article accepted pending minor revision)]

← Older revision		Revision as of 18:34, 23 June 2014
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	==Project Description==		==Project Description==

−	[[http://www.cbica.upenn.edu/sbia/software/dramms/ DRAMMS]] is a general-purpose, fully-automated, deformable image registration algorithm and software package. It was designed for '''2D-to-2D''' and '''3D-to-3D''' cross-subject, longitudinal, multi-modal registration tasks, and has been recently extended for '''spatial-temporal (4D)''' registration ~~(for the~~ quantification of tumor changes~~, the~~ study of neuro-deveolopment~~, and~~ maintenance of 4D segmentation consistency) ~~and '''population~~-~~wise'''~~ registration (for ~~atlas constructions~~). Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast registration tasks. The integration of DRAMMS into Slicer is expected to bring more diverse deformable registration options into Slicer, especially an option to deal with registration of both brain and non-brain structures, and to deal with registration under a partial loss of correspondences.	+	[[http://www.cbica.upenn.edu/sbia/software/dramms/ DRAMMS]] is a general-purpose, fully-automated, deformable image registration algorithm and software package. It was designed for '''2D-to-2D''' and '''3D-to-3D''' cross-subject, longitudinal, multi-modal registration tasks, and has been recently extended for '''spatial-temporal (4D)''' registration and '''population-wise''' registration. Some typical applications include:
		+
		+	* quantification of 4D tumor changes;
		+	* study of early-life longitudinal neuro-deveolopment;
		+	* maintenance of 4D segmentation consistency;
		+	* atlas construction in a population (infants, neonates, adults, ...);
		+	* multi-atlas based structure segmentation (brain, prostate, ...);
		+	* multi-modal registration (we had some success in histology-MRI registration of the prostate and mouse brain, looking for data for validation).
		+
		+
		+	Several evaluation studies comparing DRAMMS with many state-of-the-art registration algorithms are also being documented for brain [[http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6834815&sortType%3Dasc_p_Sequence%26filter%3DAND%28p_IS_Number%3A4359023%29 DRAMMS_in_Brain_Registration]], cardiac [[http://link.springer.com/chapter/10.1007%2F978-3-642-31340-0_22 DRAMMS_in_Cardiac_Registration]], breast registration (a journal article accepted pending minor revision) tasks.
		+
		+
		+	The integration of DRAMMS into Slicer is expected to bring more diverse deformable registration options into Slicer, especially an option to deal with registration of both brain and non-brain structures, and to deal with registration under a partial loss of correspondences.