2014 Summer Project Week:Slicer LDDMM Shape Analysis - Revision history

Saurabhjain at 03:31, 27 June 2014

2014-06-27T03:31:24Z

Saurabhjain at 03:27, 27 June 2014

2014-06-27T03:27:57Z

Saurabhjain at 03:27, 27 June 2014

2014-06-27T03:27:43Z

Saurabhjain at 03:21, 27 June 2014

2014-06-27T03:21:55Z

Saurabhjain at 03:12, 27 June 2014

2014-06-27T03:12:47Z

Saurabhjain at 03:10, 27 June 2014

2014-06-27T03:10:39Z

Saurabhjain at 03:10, 27 June 2014

2014-06-27T03:10:06Z

Saurabhjain at 17:38, 22 May 2014

2014-05-22T17:38:45Z

Saurabhjain at 17:35, 22 May 2014

2014-05-22T17:35:56Z

Saurabhjain at 17:30, 22 May 2014

2014-05-22T17:30:10Z

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 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:LDDMM-Plugin-Screen-Shot.png
 </gallery>

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 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:LDDMM-Plugin-Screen-Shot.png
 </gallery>

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 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:LDDMM-Plugin-Screen-Shot.png
-[[Image:ScreenShot_2014-06-26.png]]
+Image:ScreenShot_2014-06-26.png
 </gallery>

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 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:LDDMM-Plugin-Screen-Shot.png
-Image:ScreenShot_2014-06-26.png
+[[Image:ScreenShot_2014-06-26.png]]
 </gallery>

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 Image:PW-MIT2014.png|[[2014_Summer_Project_Week#Projects|Projects List]]
 Image:LDDMM-Plugin-Screen-Shot.png
-Image:
+Image:ScreenShot_2014-06-26.png
 </gallery>

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 * Isomics: Steve Pieper
 * Iowa: Hans Johnson
-* Utah: Josh Cates
+* Iowa: Regina Young
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 * Hans shared datasets for testing:
 https://www.dropbox.com/sh/5w2ls8b4j9ihpze/51IkhaXbTJ
 </div>
 </div>

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   vol. 2010, Article ID 974957.
-* We now plan to provide an interface to browse through the surfaces in Slicer, and create interfaces to other services including LDDMM surface matching, and geodesic time series matching for longitudinal data.
+* We now plan to create interfaces to other services including LDDMM surface matching, and geodesic time series matching and template estimation for longitudinal data.
-* In addition, we plan to make the interface more user friendly, which includes support for multiple segmentation labels stored as NiFTI files (for Han's data),  reading input from Slicer scenes, and importing the processed results to scenes.
+* In addition, we plan to make the interface more user friendly, which includes support for multiple segmentation labels stored as NiFTI files for data such as Han's (see 'Progress' tab),  getting input from Slicer scenes, and importing the processed results to scenes.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">

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 * At the previous project week, we created a simple interface, which accepts the directory location, and e-mail address (which must be registered with http://www.MRIStudio.org), and sends a template estimation job if the directory contains .byu files. To receive the estimated template, the user copies the md5 checksum from the e-mail, which reports the job completion, to the md5 box in slicer and hit receive.
 * The template estimation is performed using a variant of the approach described in:
@@ Line 39: / Line 36: @@
 * We now plan to provide an interface to browse through the surfaces in Slicer, and create interfaces to other services including LDDMM surface matching, and geodesic time series matching for longitudinal data.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
+* Hans shared datasets for testing:
 </div>
 </div>

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 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Objective</h3>
-Develop a Slicer interface to the remote processing service
+Develop a Slicer interface to various remote processing services
-for template estimation of sub cortical structures offered by
+for shape analysis of human brain sub-cortical structures offered by
-Center for Imaging Science (CIS) through our ftp site.
+Center for Imaging Science (CIS) through our portal.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Approach, Plan</h3>
 * The template estimation is performed using a variant of the approach described in:
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   vol. 2010, Article ID 974957.
-* The pipeline accepts surfaces stored in the BYU format, or binary masks stored in the ANALYZE format. The processing is done on one of the clusters available to CIS, and upon completion the user receives an e-mail with a link to the results stored on the ftp site.
+* We now plan to provide an interface to browse through the surfaces in Slicer, and create interfaces to other services including LDDMM surface matching, and geodesic time series matching for longitudinal data.
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
-* Created a simple interface, which accepts the directory location, and e-mail address (which must be registered with http://www.MRIStudio.org), and sends the remote processing job if the directory contains .byu files.
 </div>
 </div>