2014 Winter Project Week:Slicer CIP Modules - Revision history

Rharmo at 23:39, 9 January 2014

2014-01-09T23:39:10Z

2014-01-09T23:26:23Z

2014-01-09T22:51:42Z

2014-01-09T22:48:48Z

Project Description

2014-01-06T21:02:19Z

Project Description

2014-01-06T02:48:51Z

Project Description

@@ Line 22: / Line 22: @@
 <h3>Progress</h3>
 * Private github repository: https://github.com/acil-bwh/SlicerCIP
-* Implemented a simple Python module that calls multiple CLIs in order to register a probabilistic lung atlas to a new patient CT volume [[File:Screen Shot 2014-01-09 at 5.27.07 PM.png]]
+* Implemented a simple Python module that calls multiple CLIs in order to register a probabilistic lung atlas to a new patient CT volume
 </div>
 </div>

@@ Line 22: / Line 22: @@
 <h3>Progress</h3>
 * Private github repository: https://github.com/acil-bwh/SlicerCIP
-* Implemented a simple Python module that calls multiple CLIs in order to register a probabilistic lung atlas to a new patient CT volume [[File:Example.jpg]]
+* Implemented a simple Python module that calls multiple CLIs in order to register a probabilistic lung atlas to a new patient CT volume [[File:Screen Shot 2014-01-09 at 5.27.07 PM.png]]
 </div>
 </div>

@@ Line 15: / Line 15: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Approach, Plan</h3>
 * The library contains a set of tools for image processing, segmentation and airway and vessel generation using particles and inspection. Some of these tools are described in the works by Ross et al. and Kindlmann et. al. Our plan for the project week is to develop a few python modules that execute a flow of commands using a sequence of CLIs in order to perform lung and lobe segmentation, and lung atlas to patient registration. The python modules should be available via both a graphical user interface and the command line. We also aim to define nipype interfaces that utilize the python modules for workflows that can be used for clinical purposes.
 </div>
@@ Line 20: / Line 22: @@
 <h3>Progress</h3>
 * Private github repository: https://github.com/acil-bwh/SlicerCIP
-* The tools had been previously developed using C++ and ITK and have been validated and used in the works described previously.
+* Implemented a simple Python module that calls multiple CLIs in order to register a probabilistic lung atlas to a new patient CT volume [[File:Example.jpg]]
 </div>
 </div>

@@ Line 19: / Line 19: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
 * The tools had been previously developed using C++ and ITK and have been validated and used in the works described previously.
 * In the past few months, we have ported most of the available tools to CLIs

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-SLC2014.png|[[2014_Winter_Project_Week#Projects|Projects List]]
 </gallery>