2016 Summer Project Week/Segmentations Integration - Revision history

Pinter: Added progress

2016-06-25T08:33:45Z

Added progress

Lasso at 12:09, 20 June 2016

2016-06-20T12:09:01Z

Lasso at 12:03, 20 June 2016

2016-06-20T12:03:05Z

Lasso at 12:02, 20 June 2016

2016-06-20T12:02:20Z

Lasso at 12:01, 20 June 2016

2016-06-20T12:01:29Z

Lasso at 12:00, 20 June 2016

2016-06-20T12:00:34Z

Lasso at 11:54, 20 June 2016

2016-06-20T11:54:37Z

Pieper: /* Key Investigators */

2016-06-19T14:38:10Z

Key Investigators

Pinter: Detailed plan

2016-06-07T14:23:20Z

Detailed plan

Pinter at 21:47, 1 June 2016

2016-06-01T21:47:07Z

@@ Line 45: / Line 45: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
 <h3>Progress</h3>
+* Code moved from SlicerRT to Slicer core
 </div>
 </div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-Summer2016.png|[[2016_Summer_Project_Week#Projects|Projects List]]
 Image:20160526_SegmentationObject.PNG|Segmentation object
 Image:20160526_ConversionGraph.PNG|Conversion graph for automated conversions
 Image:20160526_SegmentationsArchitecture.png|Segmentations architecture
 Image:ContourRepresentations_201507.png|Representations
 </gallery>

@@ Line 6: / Line 6: @@
 Image:20160526_SegmentationsArchitecture.png|Segmentations architecture
 Image:ContourRepresentations_201507.png|Representations
-Image:SegmentationHighlights01s.png|Highlights of segmentations and segmentation editor 1
+Image:SegmentationHighlights01s.png|Highlights of segmentations 1
-Image:SegmentationHighlights02s.png|Highlights of segmentations and segmentation editor 2
+Image:SegmentationHighlights02s.png|Highlights of segmentations 2
 </gallery>

@@ Line 6: / Line 6: @@
 Image:20160526_SegmentationsArchitecture.png|Segmentations architecture
 Image:ContourRepresentations_201507.png|Representations
-Image:SegmentationHighlights01s.png|Hightlights 1
+Image:SegmentationHighlights01s.png|Highlights of segmentations and segmentation editor 1
 </gallery>

@@ Line 6: / Line 6: @@
 Image:20160526_SegmentationsArchitecture.png|Segmentations architecture
 Image:ContourRepresentations_201507.png|Representations
 </gallery>

← Older revision		Revision as of 12:00, 20 June 2016
Line 46:		Line 46:
	</div>		</div>
	</div>		</div>
−
−	~~'''To try: download latest Slicer nightly build, install SlicerRT extension and open the Segmentations module and Segment editor module.'''~~
−
−	~~= Segmentation highlights =~~
−	* Improved display: real-time synchronized display of segments in 2D (simultaneous contours and solid fill) and 3D; any number of segmentations can be shown
−	* Segments can now overlap (can be enabled/disabled for individual segments or a group of segments)
−	* Import/export from/to labelmaps and models
−	* Read/writ from/to DICOM segmentation objects (WIP) and standard VTK file formats
−	* Copy/mode segments between segmentations
−
−	~~= Segment editor highlights~~
−	* Editing is allowed on arbitrary plane orientation and at different resolution than the master volume
−	* Any segment (or a group of segments) can be used as mask
−	* Intensity threshold can be applied for all effects (only modifications to regions of a certain intensity range)
−	* Overwrite/overlap control is available for all effects (segments may be allowed to overlap with any, visible, or no other segments)
−	* Editor widget can be very easily embedded into any module's GUI
−	* Painting on 2D view and 3D views
−	* Higher-quality erosion and dilation (arbitrarily-sized spherical kernel)
−	* New logical operations effects: combine segments by add/remove/copy operations, invert/fill/clear segment (for example for scaffolding or mold generation for 3D printing)
−	* New labelmap smoothing effect: median, morphological opening, closing, Gaussian
−	* Customizable slice thickness for slice-based effects

← Older revision		Revision as of 11:54, 20 June 2016
Line 46:		Line 46:
	</div>		</div>
	</div>		</div>
		+
		+	'''To try: download latest Slicer nightly build, install SlicerRT extension and open the Segmentations module and Segment editor module.'''
		+
		+	= Segmentation highlights =
		+	* Improved display: real-time synchronized display of segments in 2D (simultaneous contours and solid fill) and 3D; any number of segmentations can be shown
		+	* Segments can now overlap (can be enabled/disabled for individual segments or a group of segments)
		+	* Import/export from/to labelmaps and models
		+	* Read/writ from/to DICOM segmentation objects (WIP) and standard VTK file formats
		+	* Copy/mode segments between segmentations
		+
		+	= Segment editor highlights
		+	* Editing is allowed on arbitrary plane orientation and at different resolution than the master volume
		+	* Any segment (or a group of segments) can be used as mask
		+	* Intensity threshold can be applied for all effects (only modifications to regions of a certain intensity range)
		+	* Overwrite/overlap control is available for all effects (segments may be allowed to overlap with any, visible, or no other segments)
		+	* Editor widget can be very easily embedded into any module's GUI
		+	* Painting on 2D view and 3D views
		+	* Higher-quality erosion and dilation (arbitrarily-sized spherical kernel)
		+	* New logical operations effects: combine segments by add/remove/copy operations, invert/fill/clear segment (for example for scaffolding or mold generation for 3D printing)
		+	* New labelmap smoothing effect: median, morphological opening, closing, Gaussian
		+	* Customizable slice thickness for slice-based effects

@@ Line 12: / Line 12: @@
 * Andras Lasso
 * Steve Pieper
 ==Project Description==

@@ Line 30: / Line 30: @@
 <h3>Approach, Plan</h3>
 * Move classes into Slicer core
-* Consider integrating vtkOrientedImageData to VTK core
+** Convert to Slicer core coding conventions (curly brackets in line with the contained block)
 </div>
 <div style="width: 27%; float: left; padding-right: 3%;">

@@ Line 23: / Line 23: @@
 ** Segmentations module: Slicer module for handling segmentation nodes, various re-usable widgets, and subject hierarchy plugins
 ** Segment Editor: Slicer module for editing segmentation nodes directly. Similar to Editor, but has a C++ core, and extended functionality that makes use of the advanced Segmentations features
-** Segment Morphology: Slicer module for performing expand/shrink and logical operations (union, intersection, subtraction) on segments. Can be used for Segment Editor effects
+** Segment Morphology: Slicer module for performing expand/shrink and logical operations (union, intersection, subtraction) on segments. Its logic can be used in Segment Editor effects
 ** Segment Registration (?): Distance map based registration of segmentations (from SlicerProstate::DistanceMapBasedRegistration, integration TBD)
 * [https://www.slicer.org/slicerWiki/index.php/File:20160526_Segmentations.pptx Presentation slides] explaining the motivation, features, and details of the infrastructure