https://www.na-mic.org/w/index.php?action=history&feed=atom&title=2016_Winter_Project_Week%2FProjects%2F3DNrrdSequences 2026-04-16T22:52:31Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.na-mic.org/w/index.php?title=2016_Winter_Project_Week/Projects/3DNrrdSequences&diff=91723&oldid=prev 2016-01-05T22:34:31Z

<p><span dir="auto"><span class="autocomment">Project Description: </span> Progress</span></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:34, 5 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l27" >Line 27:</td> <td colspan="2" class="diff-lineno">Line 27:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;!-- Progress and Next steps bullet points (fill out at the end of project week --&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;!-- Progress and Next steps bullet points (fill out at the end of project week --&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>*</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Minor fixes in PLUS to correct output</ins></div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* https://www.assembla.com/spaces/plus/tickets/1055-fix-nrrd-output-so-that-it-is-loadable-in-slicer/details</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> </table>

Rankin https://www.na-mic.org/w/index.php?title=2016_Winter_Project_Week/Projects/3DNrrdSequences&diff=91383&oldid=prev 2015-12-28T15:19:06Z

<p><span dir="auto"><span class="autocomment">Background and References</span></span></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:19, 28 December 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l32" >Line 32:</td> <td colspan="2" class="diff-lineno">Line 32:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Background and References==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Background and References==</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --&gt;</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>&lt;!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --&gt;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Header </del>of a sample 3D+t NRRD exported by PLUS</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Partial header </ins>of a sample 3D+t NRRD exported by PLUS</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>  NRRD0004</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>  NRRD0004</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>  &lt;nowiki&gt;#&lt;/nowiki&gt; Complete NRRD file format specification at:</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>  &lt;nowiki&gt;#&lt;/nowiki&gt; Complete NRRD file format specification at:</div></td></tr> </table>

Rankin https://www.na-mic.org/w/index.php?title=2016_Winter_Project_Week/Projects/3DNrrdSequences&diff=91382&oldid=prev 2015-12-28T15:18:40Z

<p><span dir="auto"><span class="autocomment">Project Description</span></span></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 15:18, 28 December 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l10" >Line 10:</td> <td colspan="2" class="diff-lineno">Line 10:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Project Description==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Project Description==</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Although the <del class="diffchange diffchange-inline">sequences </del>extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Although the <ins class="diffchange diffchange-inline">Sequences </ins>extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Project Description==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Project Description==</div></td></tr> </table>

Rankin https://www.na-mic.org/w/index.php?title=2016_Winter_Project_Week/Projects/3DNrrdSequences&diff=91381&oldid=prev 2015-12-28T15:18:11Z

<p>Created page with &quot;__NOTOC__ &lt;gallery&gt; Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|<a href="/wiki/2016_Winter_Project_Week#Projects" title="2016 Winter Project Week">Projects List</a> &lt;!-- Use the &quot;Upload file&quot; link on the left...&quot;</p> <p><b>New page</b></p><div>__NOTOC__<br /> &lt;gallery&gt;<br /> Image:PW-MIT2016.png|link=2016_Winter_Project_Week#Projects|[[2016_Winter_Project_Week#Projects|Projects List]]<br /> &lt;!-- Use the &quot;Upload file&quot; link on the left and then add a line to this list like &quot;File:MyAlgorithmScreenshot.png&quot; --&gt;<br /> File:3DNrrdScreenshot.png<br /> &lt;/gallery&gt;<br /> <br /> ==Key Investigators==<br /> * Adam Rankin<br /> <br /> ==Project Description==<br /> Although the sequences extension has support for 3D+t dataset viewing, it does not support loading of 3D+t data from Nrrd exported by PLUS.<br /> <br /> ==Project Description==<br /> {| class=&quot;wikitable&quot;<br /> ! style=&quot;text-align: left; width:27%&quot; | Objective<br /> ! style=&quot;text-align: left; width:27%&quot; | Approach and Plan<br /> ! style=&quot;text-align: left; width:27%&quot; | Progress and Next Steps<br /> |- style=&quot;vertical-align:top;&quot;<br /> |<br /> &lt;!-- Objective bullet points --&gt;<br /> * To enable loading of 3D NRRD files in the Sequences extension<br /> |<br /> &lt;!-- Approach and Plan bullet points --&gt;<br /> * Debug IO classes related to NRRD loading<br /> * Identify failure point and correct<br /> |<br /> &lt;!-- Progress and Next steps bullet points (fill out at the end of project week --&gt;<br /> *<br /> |}<br /> <br /> ==Background and References==<br /> &lt;!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --&gt;<br /> * Header of a sample 3D+t NRRD exported by PLUS<br /> NRRD0004<br /> &lt;nowiki&gt;#&lt;/nowiki&gt; Complete NRRD file format specification at:<br /> &lt;nowiki&gt;#&lt;/nowiki&gt; http://teem.sourceforge.net/nrrd/format.html<br /> &lt;nowiki&gt;#&lt;/nowiki&gt; File generated by PLUS version 2.3.0<br /> dimension: 4<br /> encoding: raw<br /> kinds: domain domain domain time<br /> sizes: 112 112 48 170<br /> space: right-anterior-superior-time<br /> space directions: (1,0,0,0) (0,1,0,0) (0,0,1,0) (0,0,0,1)<br /> space origin: (0,0,0,0)<br /> type: uint8<br /> ultrasound image orientation:=MFA<br /> ultrasound image type:=BRIGHTNESS</div>

Rankin