2016 Winter Project Week/Projects/PatchRegistration - Revision history

Adalca at 15:10, 8 January 2016

2016-01-08T15:10:10Z

Adalca at 15:08, 8 January 2016

2016-01-08T15:08:30Z

Adalca at 18:20, 4 January 2016

2016-01-04T18:20:10Z

Marianna: /* Project Description */

2015-12-24T14:00:41Z

Project Description

Marianna at 22:20, 18 December 2015

2015-12-18T22:20:20Z

Marianna at 21:47, 18 December 2015

2015-12-18T21:47:53Z

Marianna: Marianna moved page 2016 Winter Project Week:PatchRegistration to 2016 Winter Project Week/Projects/PatchRegistration

2015-12-17T22:17:50Z

Marianna moved page 2016 Winter Project Week:PatchRegistration to 2016 Winter Project Week/Projects/PatchRegistration

Adalca: Created page with 'NOTOC Image:PW-MIT2016.png|Projects List Image:WMH_T1.png|Clinical Stroke Image ==Key Investigators== - Adrian Dal…'

2015-12-09T17:35:12Z

Created page with '__NOTOC__ <gallery> Image:PW-MIT2016.png|Projects List Image:WMH_T1.png|Clinical Stroke Image </gallery> ==Key Investigators== - Adrian Dal…'

New page

__NOTOC__
<gallery>
Image:PW-MIT2016.png|[[2016_Winter_Project_Week#Projects|Projects List]]
Image:WMH_T1.png|Clinical Stroke Image
</gallery>

==Key Investigators==
- Adrian Dalca, Andreea Bobu, Polina Golland, MIT

==Project Description==
<div style="margin: 20px;">
Due to the low quality of clinical images (often with many artifacts, 7mm thick slices, etc), most standard algorithms, such as those for registration, segmentation, and analysis, will fail.
In part, this is because registration algorithm depend on assumptions of smooth anatomical structures and good quality images, which are not present in these sparse clinical acquisitions.
Here, we are investigating a patch-based discrete image registration which allows for more versatile image metrics and does not impose similar assumptions.

<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Objective</h3>
* We will investigate a current implementation for patch-based discrete registration on sparse-slice data.
</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Approach, Plan</h3>

</div>
<div style="width: 27%; float: left; padding-right: 3%;">
<h3>Progress</h3>
</div>
</div>

@@ Line 3: / Line 3: @@
 Image:PW-MIT2016.png|[[2016_Winter_Project_Week#Projects|Projects List]]
 Image:WMH_T1.png|Clinical Stroke Image
 </gallery>
@@ Line 27: / Line 28: @@
 <!-- Add a bulleted list of key points -->
 * We have an implementation of patch-based discrete registration using a standard patch distance metric. We'll start by evaluating this current metric on isotropic images
+* We'll develop the infrastracture and evaluate the current metric on isotropic data at large.
 * We'll develop a new metric for sparse images and test it out.
+|
 <!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
+* We set up registration on a buckner40 dataset with a large number of parameters and launched on a large cluster
 |}

@@ Line 26: / Line 26: @@
+|
 <!-- Add a bulleted list of key points -->
+* We have an implementation of patch-based discrete registration using a standard patch distance metric. We'll start by evaluating this current metric on isotropic images
+|
 <!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
+*
 |}

@@ Line 17: / Line 17: @@
 {| class="wikitable"
 |- style="vertical-align:top;"
-! style="text-align: left; width:27%" |       Objective
-<!-- Add a bulleted list of key points -->
+<!-- Objective bullet points -->
 * We will investigate a current implementation for patch-based discrete registration on sparse-slice data.
-! style="text-align: left; width:27%" |       Approach, Plan
 <!-- Add a bulleted list of key points -->
+*
-−
+|
 <!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
+*
 |}

@@ Line 16: / Line 16: @@
 Here, we are investigating a patch-based discrete image registration which allows for more versatile image metrics and does not impose similar assumptions.
-<div style="width: 27%; float: left; padding-right: 3%;">
+{| class="wikitable"
-<h3>Objective</h3>
+|- style="vertical-align:top;"
 * We will investigate a current implementation for patch-based discrete registration on sparse-slice data.
-</div>
+! style="text-align: left; width:27%" |       Approach, Plan
-<div style="width: 27%; float: left; padding-right: 3%;">
+<!-- Add a bulleted list of key points -->
-<h3>Approach, Plan</h3>
-</div>
+! style="text-align: left; width:27%" |      Progress
-<div style="width: 27%; float: left; padding-right: 3%;">
+<!-- Fill this out at the end of Project Week; describe what you did this week and what you plan to do next -->
-<h3>Progress</h3>
-</div>
+|}

@@ Line 6: / Line 6: @@
 ==Key Investigators==
-- Adrian Dalca, Andreea Bobu, Polina Golland, MIT
+*Adrian Dalca (MIT)
 ==Project Description==

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