Algorithm:SlicerModules - Revision history

Styner: /* Algorithms Core: Slicer Modules Under Development */

2013-12-16T21:13:22Z

Algorithms Core: Slicer Modules Under Development

Polina: /* Algorithms Core: Slicer Modules Under Development */

2013-10-13T00:07:36Z

Algorithms Core: Slicer Modules Under Development

Styner: /* Algorithms Core: Slicer Modules Under Development */

2013-09-12T16:14:15Z

Algorithms Core: Slicer Modules Under Development

Styner: /* Algorithms Core: Slicer Modules Under Development */

2013-09-12T16:03:13Z

Algorithms Core: Slicer Modules Under Development

Zhulj: /* Algorithms Core: Slicer Modules Under Development */

2013-09-01T03:14:26Z

Algorithms Core: Slicer Modules Under Development

Zhulj: /* Algorithms Core: Slicer Modules Under Development */

2013-09-01T03:14:00Z

Algorithms Core: Slicer Modules Under Development

Tannenba at 19:37, 31 August 2013

2013-08-31T19:37:58Z

Kikinis: /* Algoirthms Core Slicer Models Under Development */

2013-08-31T16:06:51Z

Algoirthms Core Slicer Models Under Development

Whitaker: Created page with ' = Algoirthms Core Slicer Models Under Development = * Left atrium segmentation: In collaboration with the Afib DBP. Graph-cut based segmentation that loads meshes, allows use…'

2013-08-31T16:03:41Z

Created page with ' = Algoirthms Core Slicer Models Under Development = * Left atrium segmentation: In collaboration with the Afib DBP. Graph-cut based segmentation that loads meshes, allows use…'

New page

= Algoirthms Core Slicer Models Under Development =

* Left atrium segmentation: In collaboration with the Afib DBP. Graph-cut based segmentation that loads meshes, allows users to interactively "center" the model, perform the graph-cut segmentation, scan convert results into a volumetric format. Contact: Gopal Veni, University of Utah.

* Multimaterial meshing: Surface and volumetric meshing of multimaterial volumes with output surface triangles viewable within Slicer. Contact: Jonathan Bronson, University of Utah.

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 * DTI Registration and DTI atlas building via DTIAtlasBuilder/DTI-Reg: Unbiased group-wise atlas building including additional refinement step, also provides pari-wise DTI registration tool. Contact: Francois Budin, UNC
-* DTI fiber profile extraction & analysis via DTIAtlasFiberAnalyzer: Fiber resampling,  profile extraction, statistics gathering and fusion of precomputed attributes, stat results with fibers for visualization. . Contact: Francois Budin, UNC
+* DTI fiber profile extraction & analysis via DTIAtlasFiberAnalyzer: Fiber resampling,  profile extraction, statistics gathering and fusion of precomputed attributes, stat results with fibers for visualization. Contact: Francois Budin, UNC
 * SPHARM-PDM & Particle shape correspondence and analysis: From binary segmentations, generate SPHARM-PDM descriptions, updated via the particle-group wise correspondence. Include statistical analysis and QC visualization of many multiple surfaces at the same time. Contact: Francois Budin & Beatriz Panigua, UNC
 * Registration and segmentation of clinical quality brain MRI scans, with application to stroke. Contact: Ramesh Sridharan, MIT.

← Older revision		Revision as of 00:07, 13 October 2013
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	* SPHARM-PDM & Particle shape correspondence and analysis: From binary segmentations, generate SPHARM-PDM descriptions, updated via the particle-group wise correspondence. Include statistical analysis and QC visualization of many multiple surfaces at the same time. Contact: Francois Budin & Beatriz Panigua, UNC		* SPHARM-PDM & Particle shape correspondence and analysis: From binary segmentations, generate SPHARM-PDM descriptions, updated via the particle-group wise correspondence. Include statistical analysis and QC visualization of many multiple surfaces at the same time. Contact: Francois Budin & Beatriz Panigua, UNC
		+
		+	* Registration and segmentation of clinical quality brain MRI scans, with application to stroke. Contact: Ramesh Sridharan, MIT.

← Older revision		Revision as of 16:14, 12 September 2013
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	* Left atrial scar segmentation: Given the endocardium of the left atrium, this module automatically extracts the scarring tissue. Contact: Liangjia Zhu, SUNY Stony Brook.		* Left atrial scar segmentation: Given the endocardium of the left atrium, this module automatically extracts the scarring tissue. Contact: Liangjia Zhu, SUNY Stony Brook.
		+
		+	* DTI Fiber Cleaning & Cropping via FiberViewerLight: Given Slicer fiber tracts, perform semi-automatic cleaning and clustering of fibers, define parametrization planes and crop fibers as necessary. Contact: Francois Budin, UNC
		+
		+	* Alternative diffusion and fiber processing via DTIProcess: Alternative set of tools for diffusion reconstruction, processing, fiber tracking and processing (dtiestim, dtiprocess, fiber track and fiber process, fiberstats (statistics over fiber sets), dtiaverage (averaged over multiple dti images). Contact: Francois Budin, UNC
		+
		+	* DTI Registration and DTI atlas building via DTIAtlasBuilder/DTI-Reg: Unbiased group-wise atlas building including additional refinement step, also provides pari-wise DTI registration tool. Contact: Francois Budin, UNC
		+
		+	* DTI fiber profile extraction & analysis via DTIAtlasFiberAnalyzer: Fiber resampling, profile extraction, statistics gathering and fusion of precomputed attributes, stat results with fibers for visualization. . Contact: Francois Budin, UNC
		+
		+	* SPHARM-PDM & Particle shape correspondence and analysis: From binary segmentations, generate SPHARM-PDM descriptions, updated via the particle-group wise correspondence. Include statistical analysis and QC visualization of many multiple surfaces at the same time. Contact: Francois Budin & Beatriz Panigua, UNC

@@ Line 1: / Line 1: @@
 = Algorithms Core: Slicer Modules Under Development =
-These modules will become available as extensions in the Slicer Extension Manager
+These modules will become (or are already) available as extensions in the Slicer Extension Manager as part of the NAMIC Algorithm Core efforts:
 * Left atrium segmentation: In collaboration with the Afib DBP.  Graph-cut based segmentation that loads meshes, allows users to interactively "center" the model, perform the graph-cut segmentation, scan convert results into a volumetric format.  Contact: Gopal Veni, University of Utah.

← Older revision		Revision as of 03:14, 1 September 2013
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	* Model-based RSS for left atrium segmentation: RSS integrated with a shape prior that is specifically desgined for segmentating the left atrium from MR images. Contact: Liangjia Zhu, SUNY Stony Brook.		* Model-based RSS for left atrium segmentation: RSS integrated with a shape prior that is specifically desgined for segmentating the left atrium from MR images. Contact: Liangjia Zhu, SUNY Stony Brook.

−	* Left atrial scar segmentation: Given the endocardium of the left atrium, this module automatically ~~extract~~ the scarring tissue. Contact: Liangjia Zhu, SUNY Stony Brook.	+	* Left atrial scar segmentation: Given the endocardium of the left atrium, this module automatically extracts the scarring tissue. Contact: Liangjia Zhu, SUNY Stony Brook.

← Older revision		Revision as of 03:14, 1 September 2013
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	* Sobolev active contours: Robust implementation of the active contour methodology using a Sobolev norm, giving much better results in the presence of noise. Contact: Arie Nakhmani, UAB.		* Sobolev active contours: Robust implementation of the active contour methodology using a Sobolev norm, giving much better results in the presence of noise. Contact: Arie Nakhmani, UAB.
		+
		+	* Model-based RSS for left atrium segmentation: RSS integrated with a shape prior that is specifically desgined for segmentating the left atrium from MR images. Contact: Liangjia Zhu, SUNY Stony Brook.
		+
		+	* Left atrial scar segmentation: Given the endocardium of the left atrium, this module automatically extract the scarring tissue. Contact: Liangjia Zhu, SUNY Stony Brook.

@@ Line 1: / Line 1: @@
-= Algoirthms Core Slicer Models Under Development =
+= Algoirthms Core: Slicer Moduls Under Development =
 * Left atrium segmentation: In collaboration with the Afib DBP.  Graph-cut based segmentation that loads meshes, allows users to interactively "center" the model, perform the graph-cut segmentation, scan convert results into a volumetric format.  Contact: Gopal Veni, University of Utah.
 * Multimaterial meshing:  Surface and volumetric meshing of multimaterial volumes with output surface triangles viewable within Slicer.  Contact: Jonathan Bronson, University of Utah.