https://www.na-mic.org/w/index.php?action=history&feed=atom&title=BIRNDUP_at_NMR 2026-04-17T20:07:47Z Revision history for this page on the wiki MediaWiki 1.33.0 https://www.na-mic.org/w/index.php?title=BIRNDUP_at_NMR&diff=4193&oldid=prev 2006-12-18T13:37:48Z

<p>Update from Wiki</p> <p><b>New page</b></p><div>* Make sure that /usr/java/j2sdk/bin is in your path so that you can run java. ''which java'' should return /usr/java/j2sdk/bin/java.<br /> * ''cd ~nicole/work/slicer2''<br /> * ''./slicer2-linux-x86''<br /> * Click on More<br /> * Click on BIRNDUP<br /> * Click on Run Interface<br /> * Click on File-&gt;Preferences and set the following values:<br /> ** DCANON_DIR /autofs/space/birn_045/users/BWH/nicole/anonym_scripts/dcanon<br /> ** DEFACE_DIR /autofs/space/birn_045/users/BWH/nicole/deface<br /> ** LINKTABLE /autofs/space/birn_045/users/BWH/nicole/deface/linktable<br /> ** UPLOAD2_DIR /autofs/space/birn_045/users/BWH/nicole/upload2<br /> * Select directory that has a DICOM volume in it<br /> * Set project, visit, study numbers<br /> * Set drop down to Deface<br /> * Click Sort<br /> * Click Deidentify for the volume's new id<br /> * New slicer pops up with a movie showing the defacing if all goes well, defaced dicom is in<br /> <br /> ${DEFACE_DIR}/Project_[projectnum]/[new id]/Visit_[visitnum]/Study_[studynum]/Raw_Data/[volume]-anon/Deface</div>

Andy