https://www.na-mic.org/w/index.php?action=history&feed=atom&title=BIRN_Booth_SFN_2005
BIRN Booth SFN 2005 - Revision history
2026-05-17T21:40:15Z
Revision history for this page on the wiki
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Andy: Update from Wiki
2006-12-18T13:26:44Z
<p>Update from Wiki</p>
<p><b>New page</b></p><div>'''Move-in Times'''<br />
<br />
* Wednesday Nov 9: 12:00 pm - 4:30 pm<br />
* Thursday Nov 10: 8:00 am - 4:30 pm<br />
* Friday Nov 11: 8:00 am - 6:00 pm<br />
<br />
<br />'''BIRN Booth exhibit times'''<br />
<br />
{| border="1" cellpadding="2"<br />
|+<br />
|-<br />
!<br />
! Sun-Nov 13<br />
! Mon-Nov 14<br />
! Tue-Nov 15<br />
! Wed-Nov 16<br />
|-<br />
! 7:00-9:30 am<br />
| Daily Setup<br />
| Daily Setup<br />
| Daily Setup<br />
| Daily Setup<br />
|-<br />
! 9:30-11:30 am<br />
| BIRN-CC<br />
| BIRN-CC<br />
| BIRN-CC<br />
| Test Bed: Function<br />
|-<br />
! 11:30-1:30 pm<br />
| Test Bed: Mouse<br />
| Test Bed: Function<br />
| Test Bed: Morphometry<br />
| Test Bed: Mouse<br />
|-<br />
! 1:30-3:30 pm<br />
| Test Bed: Function<br />
| Test Bed: Morphometry<br />
| Test Bed: Mouse<br />
| Test Bed: Morphometry<br />
|-<br />
! 3:30-5:00 pm<br />
| Test Bed: Morphometry<br />
| Test Bed: Mouse<br />
| Test Bed: Function<br />
| BIRN-CC<br />
|}<br />
<br />
<br />'''Demonstration Targets for each testbed'''<br />
<br />
* '''Morph BIRN'''<br />
** Morphometry BIRN presentation<br />
*** [[Media:Mbirn_scientific_and_tools.ppt|Morphometry BIRN: Science & Tool Dissemination]]<br />
*** [[Media:Mbirn_Calibration-update-AHM2005v2.ppt| Morphometry BIRN: MR Calibration]]<br />
*** [[Media:Mbirn_AVI-update-2005-10-17.ppt| Morphometry BIRN: Analysis, Visualization and Interpretation]]<br />
** Public data we'd like to offer through the BIRN Portal:<br />
*** [[Mbirn:_Data_Dissemination|Mbirn: Data Dissemination]]<br />
** Software tools we'd like to offer through the BIRN Portal:<br />
*** [[Mbirn:_Software_Tools_Dissemination|Mbirn: Software Tools Dissemination]]<br />
<br />
<nowiki>**** Morph BIRN booth support ****<br />
Sunday 3:30-5pm: Dan Marcus, Tim Olsen, Jorge Jovicich, Anthony Kolasny<br />
Monday 1:30-3:30pm: Christine Fennema-Notestine, Jorge Jovicich<br />
Tuesday 11:30am-1:30pm: Anthony Kolasny, Jorge Jovicich<br />
Wednesday 1:30-3:30pm: Christine Fennema-Notestine, Jorge Jovicich<br />
</nowiki><br />
<br />
<br /><br />
<br />
* '''Function BIRN'''<br />
** Phase I Datasets and that interface<br />
** HID/GUI demos<br />
** QA phantom methods<br />
** XML schema/usefulness<br />
*** XML-enabled tools<br />
** E-prime files from Phase I<br />
<br />
<br /><br />
<br />
* '''Mouse BIRN'''<br />
** Tools:<br />
*** A version of a mouse BIRN atlasing environment<br />
*** Pipelines to process and atlas MRI data acquired at CIT or Duke<br />
** Data collection methodology:<br />
*** MRI<br />
*** Histology<br />
*** Nissl<br />
*** High resolution<br />
** Data:<br />
*** Data from one of the mouse models of neurological disease: Exact data set TBD<br />
*** Some Gensat data registered to mouse BIRN atlas<br />
*** 3D Mouse Brain data set<br />
*** 3D Paxinos MRI atlas<br />
*** Some microarray/anatomical data<br />
** Data Management:<br />
*** Developmental ontology<br />
*** Subcellular anatomy ontology<br />
*** Genenetwork Search/get commands<br />
** Workflows/tutorials/other documentation:<br />
*** Tutorial of how to register Gensat data (or similar) using SmartAtlas<br />
*** Tutorial of how to process 3D MRI volumes (from Caltech and Duke) and register them to the mouse BIRN atlas<br />
*** Document with list of mouse BIRN publications to date<br />
<br />
<br /><br />
<br />
* '''BIRN CC'''<br />
<br />
<br /><br />
<br />
----</div>
Andy