CTSC Ellen Grant, CHB - Revision history

Dginsburg: /* XNAT Schema Mapping - Dan G */

2010-04-15T18:35:06Z

XNAT Schema Mapping - Dan G

Dginsburg: /* XNAT Schema Mapping - Dan G */

2010-04-15T18:32:10Z

XNAT Schema Mapping - Dan G

Dginsburg: /* XNAT Evaluation - Dan G */

2010-04-15T18:22:51Z

XNAT Evaluation - Dan G

Dginsburg: /* Sprint 2 */

2010-04-15T14:53:44Z

Sprint 2

Wjp: /* Sprint 2 */

2010-04-12T13:42:05Z

Sprint 2

Wjp: /* Helpful XNAT links */

2010-04-12T13:39:41Z

Helpful XNAT links

Wjp: /* Use Case Assessment #2 */

2010-04-12T13:39:07Z

Use Case Assessment #2

Wjp: /* Sprint 2 */

2010-04-08T20:43:00Z

Sprint 2

Wjp: /* first sprint */

2010-04-08T20:38:32Z

first sprint

Wjp: /* second sprint */

2010-04-08T20:38:20Z

second sprint

@@ Line 154: / Line 154: @@
 | User, Group
 | I don't think these belong in here once we go to XNAT, we will have to re-evaluate how we do authentication.  Ideally we should use the accounts in XNAT rather than what we do now.
-|-
+|}
 ==Sprint 1==

← Older revision		Revision as of 18:32, 15 April 2010
Line 110:		Line 110:

	The following table maps between each of these tags and the xnat.xsd schema in XNAT 1.4:		The following table maps between each of these tags and the xnat.xsd schema in XNAT 1.4:
		+
		+	{\| class="wikitable"
		+	\|-
		+	! Tag
		+	! XNAT Schema Equivalent
		+	\|-
		+	\| PatientID
		+	\| xnat:subjectData/label (this is where Wendy's script stores the MRID), retrieved with (e.g., ./XNATRestClient -u USERNAME -p PASSWORD -host http://localhost:8080/xnat/ -m GET -remote /REST/projects/FNNDSC_test/subjects)
		+	\|-
		+	\| Directory
		+	\| xnat:experiment/label
		+	\|-
		+	\| PatientName
		+	\| xnat:imageSessionData/dcmPatientName
		+	\|-
		+	\| PatientAge
		+	\| xnat:demographicData/xnat:abstractDemographicData/(dob,yob,age)
		+	\|-
		+	\| PatientSex
		+	\| xnat:demographicData/gender
		+	\|-
		+	\| PatientBirthday
		+	\| xnat:demographicData/xnat:abstractDemographicData/(dob,yob,age)
		+	'''Q''': I think dob/yob/age are mutually exclusive, so if age is put in I am not sure if DOB is available?
		+	\|-
		+	\| ImageScanDate
		+	\| xnat:experimentData/date
		+	\|-
		+	\| ScannerManufacturer
		+	\| xnat:imageSessionData/scanner/manufacturer
		+	NOTE: It looks like there might be server config to have the drop-down have pre-defined values
		+	\|-
		+	\| ScannerModel
		+	\| xnat:imageSessionData/scanner/model
		+	\|-
		+	\| SoftwareVer
		+	\| There are a lot of useful fields in xnat:mrScanData, but I did not in particular find the software version.
		+	'''Q''': Should it be added? Did I miss it?
		+	\|-
		+	\| Scan
		+	\| xnat:mrScanData/parameters/scanSequence
		+	\|-
		+	\| User, Group
		+	\| I don't think these belong in here once we go to XNAT, we will have to re-evaluate how we do authentication. Ideally we should use the accounts in XNAT rather than what we do now.
		+	\|-
		+	}

	==Sprint 1==		==Sprint 1==

@@ Line 85: / Line 85: @@
 * Can't get user sessions to work, so I modified Wendy's scripts to pass -u/-p on each call, awaiting fix on xnat_discussion list [http://groups.google.com/group/xnat_discussion/browse_thread/thread/fefd777638a8ad0d link]
 * Next step is to go through xnat.xsd schema and see how it maps to the fields we are currently using in our own XML.  Will post results on Wiki when done.
 ==Sprint 1==

@@ Line 80: / Line 80: @@
 *** make appropriate queries, and
 *** translate xml responses into appropriate format for web-based front end to display.
 ==Sprint 1==

@@ Line 74: / Line 74: @@
 ** Rudolph and Dan Ginsburg will choose and provide three datasets for upload with these scripts.
 ** Wendy will upload these datasets using the previously developed mapping between Rudolph's data description and XNAT's schema.
-** Wendy will send Dan a pointer to XNAT 1.4 documentation and tutorials.
+** Wendy will send Dan a pointer to XNAT 1.4 documentation and tutorials.(Done: see [http://www.na-mic.org/Wiki/index.php/CTSC_Ellen_Grant,_CHB#Helpful_XNAT_links here] )
 ** After this upload, we will all visit and review organization of data on XNAT.
 ** Dan will also abstract their XML description of metadata used to populate their web-based front end, to make a friendlier adaptor for XNAT schema.

@@ Line 93: / Line 93: @@
 == Helpful XNAT links ==
-[http://nrg.wikispaces.com/XNAT http://nrg.wikispaces.com/XNAT]
+[http://nrg.wikispaces.com/XNAT XNAT 1.4 documentation]
 [http://nrg.wikispaces.com/Understanding+the+XNAT+Data+Model Data Model]

← Older revision		Revision as of 13:39, 12 April 2010
Line 91:		Line 91:
	=Use Case Assessment #2=		=Use Case Assessment #2=

		+	== Helpful XNAT links ==
		+
		+	[http://nrg.wikispaces.com/XNAT http://nrg.wikispaces.com/XNAT]
		+
		+	[http://nrg.wikispaces.com/Understanding+the+XNAT+Data+Model Data Model]
		+
		+	[http://central.xnat.org/schemas/xnat/xnat.xsd XSD document ]
		+
		+	[http://nrg.wikispaces.com/XNAT+REST+API REST API (the API we'll use)]
		+
		+	[http://nrg.wikispaces.com/XNAT+REST+API+Usage REST API usage guide ]
		+
		+	[http://nrg.wikispaces.com/XNAT+REST+Quick+Tutorial REST tutorial ]
		+
		+	[http://nrg.wikispaces.com/XNAT+REST+XML+Path+Shortcuts XML path shortcuts & xsiTypes]

	=Use Case Assessment #1=		=Use Case Assessment #1=

@@ Line 69: / Line 69: @@
 = Progress notes =
-==second sprint==
+==Sprint 2==
 * '''Meeting on 4/08/2010:''' work has restarted on this effort. In the April/May timeframe:
 ** Wendy will revisit the tcl scripts and ensure that they are compliant with NEW XNAT 1.4 release.