https://www.na-mic.org/w/index.php?action=history&feed=atom&title=Calibrating_Slicer%27s_EM_SegmenterCalibrating Slicer's EM Segmenter - Revision history2026-05-05T12:20:50ZRevision history for this page on the wikiMediaWiki 1.33.0https://www.na-mic.org/w/index.php?title=Calibrating_Slicer%27s_EM_Segmenter&diff=8112&oldid=prevPohl at 22:30, 5 March 20072007-03-05T22:30:33Z<p></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:30, 5 March 2007</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We provide an example of an image sequence, which cannot be segmented with the EMAtlasBrainClassifier module. We go over the necessary steps to adjust the module to this new sequence via the Slicer module [[Media:Pohl-miccai-short-2005.pdf| EMSegment]] . EMSegmenter is a more complex version of EMAtlasBrainClassifier. It allows the user to change the image sequences, the number of structures to be segmented, as well as the characterizes of the structures. We end the discussion by showing how to transfer the results of EMSegment to the EMAtlasBrainClassifier module.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>We provide an example of an image sequence, which cannot be segmented with the EMAtlasBrainClassifier module. We go over the necessary steps to adjust the module to this new sequence via the Slicer module [[Media:Pohl-miccai-short-2005.pdf| EMSegment]] . EMSegmenter is a more complex version of EMAtlasBrainClassifier. It allows the user to change the image sequences, the number of structures to be segmented, as well as the characterizes of the structures. We end the discussion by showing how to transfer the results of EMSegment to the EMAtlasBrainClassifier module.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>We also invited Istvan Csapo (Center for Neurological Imaging , BWH), who will discuss his experience in customizing the module towards healthy aging. Istvan has started <del class="diffchange diffchange-inline">the </del>[[<del class="diffchange diffchange-inline">Documentation_for_EMsegment</del>]] module, which we hope will be completed by other users.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>We also invited Istvan Csapo (Center for Neurological Imaging , BWH), who will discuss his experience in customizing the module towards healthy aging. Istvan has started <ins class="diffchange diffchange-inline">a </ins>[[<ins class="diffchange diffchange-inline">Media:Training_EMLocalSegment_v1.pdf| document</ins>]] <ins class="diffchange diffchange-inline">describing the </ins>module, which we hope will be completed by other users.</div></td></tr>
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</table>Pohlhttps://www.na-mic.org/w/index.php?title=Calibrating_Slicer%27s_EM_Segmenter&diff=4128&oldid=prevAndy: Update from Wiki2006-12-18T13:36:29Z<p>Update from Wiki</p>
<p><b>New page</b></p><div>The Slicer module EMAtlasBrainClassifier [[Media:SlicerAdvancedTraining_EMBrainAtlasClassifier_V1.0.ppt| EMAtlasBrainClassifier ]] robustly partitions MRIs into gray and white matter, and cortical spinal fluid. Many labs, however, are interested in further dividing these structures or identify pathologies, such as lesions. Also, the module currently requires T1 and T2 weighted images. In this tutorial, we explain, how to customize the module to these segmentation problems.<br />
<br />
We provide an example of an image sequence, which cannot be segmented with the EMAtlasBrainClassifier module. We go over the necessary steps to adjust the module to this new sequence via the Slicer module [[Media:Pohl-miccai-short-2005.pdf| EMSegment]] . EMSegmenter is a more complex version of EMAtlasBrainClassifier. It allows the user to change the image sequences, the number of structures to be segmented, as well as the characterizes of the structures. We end the discussion by showing how to transfer the results of EMSegment to the EMAtlasBrainClassifier module.<br />
<br />
We also invited Istvan Csapo (Center for Neurological Imaging , BWH), who will discuss his experience in customizing the module towards healthy aging. Istvan has started the [[Documentation_for_EMsegment]] module, which we hope will be completed by other users.</div>Andy