Collaboration:College of William and Mary - Revision history

Marianna at 17:04, 14 December 2016

2016-12-14T17:04:35Z

Marianna at 19:19, 16 December 2009

2009-12-16T19:19:09Z

Marianna: /* Publications */

2009-12-02T14:47:30Z

Publications

Marianna: /* Projects */

2009-12-02T14:38:02Z

Projects

Marianna at 14:37, 2 December 2009

2009-12-02T14:37:28Z

Marianna: /* Key Personnel */

2009-12-01T17:07:22Z

Key Personnel

Marianna at 21:06, 30 November 2009

2009-11-30T21:06:52Z

Marianna at 19:56, 30 November 2009

2009-11-30T19:56:59Z

Marianna at 19:56, 30 November 2009

2009-11-30T19:56:18Z

Fedorov: /* Funding */

2009-11-25T16:16:54Z

Funding

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 ==Publications==
-* Chrisochoides N, Fedorov A, Kot A, Archip N, Black P, Clatz O, Golby A, Kikinis R, Warfield S. [http://www.na-mic.org/publications/item/view/44 Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing.] Proceedings of the ACM/IEEE conference on Supercomputing 2006; 37-50.
+* Chrisochoides N., Fedorov A., Kot A., Archip N., Black P.M., Clatz O., Golby A.J., Kikinis R., Warfield S.K.  [http://www.na-mic.org/publications/item/view/44 Toward Real-Time Image Guided Neurosurgery using Distributed and Grid Computing.] Proceedings of the ACM/IEEE conference on Supercomputing 2006 Oct; 37-50.
-* Fedorov A, Chrisochoides N, Kikinis R, Warfield S. [http://www.na-mic.org/publications/item/view/37 An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images.] Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 1:658-661.
+* Fedorov A., Chrisochoides N., Kikinis R., Warfield S.K.  [http://www.na-mic.org/publications/item/view/37 An Evaluation of Three Approaches to Tetrahedral Mesh Generation for Deformable Registration of Brain MR Images.] Proc IEEE Int Symp Biomed Imaging. 2006 Apr; 658-61.
-* Fedorov A, Billet E, Prastawa M, Gerig G, Radmanesh A, Warfield S, Kikinis R, Chrisochoides N. [http://www.na-mic.org/publications/item/view/1711 Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures.] ISVC 2008, Part I, LNCS 5358, pp. 594–603, 2008.
+* Fedorov A., Billet E., Prastawa M., Gerig G., Radmanesh A., Warfield S.K., Kikinis R., Chrisochoides N.  [http://www.na-mic.org/publications/item/view/1711 Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures.] The 4th International Symposium on Visual Computing 2008 Dec; LNCS 5358:594-603.
-* A.Fedorov and N.Chrisochoides [http://crtc.wm.edu/papers/conf_74.pdf Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions.] 17th International Meshing Roundtable, 2008.
+* Fedorov A., Chrisochoides  N. [http://crtc.wm.edu/papers/conf_74.pdf Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions.] 17th International Meshing Roundtable, 2008.
-* Y.Liu, A.Fedorov, R.Kikinis, N.Chrisochoides [http://crtc.wm.edu/papers/conf_94.pdf Real-time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture.] IEEE International Conference on Bioinformatics & Biomedicine, 2009 (accepted).
+* Y.Liu, A.Fedorov, R.Kikinis, N.Chrisochoides [http://crtc.wm.edu/papers/conf_94.pdf Real-time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture.] IEEE International Conference on Bioinformatics & Biomedicine, 2009.
 * [http://crtc.wm.edu/html_output/publications_by_year.htm CRTC publications by year]

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-Back to [[NA-MIC_External_Collaborations]]
+Back to [[NA-MIC_External_Collaborations|NA-MIC External Collaborations]]
+__NOTOC__
 ==Abstract==
 This project has 3 goals:

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 ==Publications==
-* N.Chrisochoides, A.Fedorov, A.Kot, N.Archip, P.Black, O.Clatz, A.Golby, R.Kikinis, S.K.Warfield "Toward Real-Time, Image Guided Neurosurgery Using Distributed and Grid Computing" IEEE/ACM International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing), 2006 [http://crtc.wm.edu/papers/conf_67.pdf pdf]
+* Chrisochoides N, Fedorov A, Kot A, Archip N, Black P, Clatz O, Golby A, Kikinis R, Warfield S. [http://www.na-mic.org/publications/item/view/44 Toward Real-Time Image Guided Neurosurgery Using Distributed and Grid Computing.] Proceedings of the ACM/IEEE conference on Supercomputing 2006; 37-50.
-* A.Fedorov, N.Chrisochoides, R.Kikinis, S.K.Warfield "An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images" ISBI 2006 [http://crtc.wm.edu/papers/conf_66.pdf pdf]
+* Fedorov A, Chrisochoides N, Kikinis R, Warfield S. [http://www.na-mic.org/publications/item/view/37 An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images.] Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2006; 1:658-661.
-* A.Fedorov, E.Billet, M.Prastawa, A.Radmanesh, G.Gerig, R.Kikinis, S.K.Warfield, N.Chrisochoides "Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures" 4th International Symposium on Visual Computing, 2008 [http://crtc.wm.edu/papers/conf_88.pdf pdf]
+* Fedorov A, Billet E, Prastawa M, Gerig G, Radmanesh A, Warfield S, Kikinis R, Chrisochoides N. [http://www.na-mic.org/publications/item/view/1711 Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures.] ISVC 2008, Part I, LNCS 5358, pp. 594–603, 2008.
-* A.Fedorov and N.Chrisochoides " Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions" 17th International Meshing Roundtable, 2008 [http://crtc.wm.edu/papers/conf_74.pdf pdf]
+* A.Fedorov and N.Chrisochoides [http://crtc.wm.edu/papers/conf_74.pdf Tetrahedral Mesh Generation for Non-Rigid Registration of Brain MRI: Analysis of the Requirements and Evaluation of Solutions.] 17th International Meshing Roundtable, 2008.
-* Y.Liu, A.Fedorov, R.Kikinis, N.Chrisochoides "Real-time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture" IEEE International Conference on Bioinformatics & Biomedicine, 2009 (accepted) [http://crtc.wm.edu/papers/conf_94.pdf pdf]
+* Y.Liu, A.Fedorov, R.Kikinis, N.Chrisochoides [http://crtc.wm.edu/papers/conf_94.pdf Real-time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture.] IEEE International Conference on Bioinformatics & Biomedicine, 2009 (accepted).
 * [http://crtc.wm.edu/html_output/publications_by_year.htm CRTC publications by year]

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 * [http://crtc.wm.edu/html_output/medical_image_anal.htm Real-time non-rigid registration]
 * [http://crtc.wm.edu/html_output/mesh_generation_for_medical_imaging.htm Image to mesh conversion]
-* Speculative Execution for Non-Rigid Registration over the TeraGrid [http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf]
+* [http://www.wm.edu/as/computerscience/documents/cstechreports/WM-CS-2009-05.pdf Speculative Execution for Non-Rigid Registration over the TeraGrid]
 ==Publications==

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 ==Funding==
-* A Novel Algoithmic Approach for Real-Time Image-to-Mesh Conversion of Brain MRI, 09/01/2009-08/31/2012, grant No. NSF CCF-0916526
+* A Novel Algorithmic Approach for Real-Time Image-to-Mesh Conversion of Brain MRI, 09/01/2009-08/31/2012, grant No. NSF CCF-0916526
 * A Multi-Layered Finite Element Application and Runtime System  for Scalable High-End Computer Architectures, 09/01/2008-08/31/2011, grant No. NSF CCF-0833081
 * Software Environment for Real-Time Non-Rigid Registration using Commodity and Grid Computing, 09/01/2007-08/31/2010, grant No. NSF CNS-719929.

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 This project is a funded in part from NSF and John Simon Guggenheim Foundation
 ==Key Personnel==
-*Nikos Chrisochoides, PI, Andrey Chernikov, Yixun Liu, Panagiotis Foteinos
+*College of William & Mary: Nikos Chrisochoides, PI, Andrey Chernikov, Yixun Liu, Panagiotis Foteinos
 *NA-MIC: Andriy Fedorov

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 ==Funding==
-* A Novel Algoithmic Approach for Real-Time Image-to-Mesh Conversion of Brain MRI, 2009-2012, grant No. NSF CCF-0916526
+* A Novel Algoithmic Approach for Real-Time Image-to-Mesh Conversion of Brain MRI, 09/01/2009-08/31/2012, grant No. NSF CCF-0916526
-* A Multi-layered Finite Element Application and Runtime System  for Scalable High-End Computer Architectures, 2008-2011, grant No. NSF CCF-0833081
+* A Multi-Layered Finite Element Application and Runtime System  for Scalable High-End Computer Architectures, 09/01/2008-08/31/2011, grant No. NSF CCF-0833081
-* Software Environment for Real-Time Non Rigid Registration of Intraoperative Medical Images using commodity and Grid Computing, 2007-2009, grant No. NSF CSI-719929.
+* Software Environment for Real-Time Non-Rigid Registration using Commodity and Grid Computing, 09/01/2007-08/31/2010, grant No. NSF CNS-719929.
-* Three-Dimensional Generalized Parallel Delaunay Mesh Generation for the Numerical Solution of Partial Differential Equations, 2007-2008, grant No. NSF CCS-0750901.
+* Three-Dimensional Generalized Parallel Delaunay Mesh Generation for the Numerical Solution of Partial Differential Equations, 09/15/2007-02/28/2009, grant No. NSF CCF-0750901.
 ==Resource Links==
 [http://crtc.wm.edu Center for Real-Time Computing]

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 ==Abstract==
 This project has 3 goals:
-* 1. '''Deliver guaranteed quality Image-to-Mesh (I2M) conversion tools for non-rigid registration of brain MRI.''' Specifically, we are interested  to extend, for medical images, the traditional Delaunay-based mesh generation methods and develop a prototype software module for real-time I2M conversion that will simultaneous address four fundamental I2M conversion problems: image fidelity, sliver elimination, and guaranteed gradation and size optimality of the mesh as well termination of the FE-mesh process.
+# '''Deliver guaranteed quality Image-to-Mesh (I2M) conversion tools for non-rigid registration of brain MRI.''' Specifically, we are interested  to extend, for medical images, the traditional Delaunay-based mesh generation methods and develop a prototype software module for real-time I2M conversion that will simultaneous address four fundamental I2M conversion problems: image fidelity, sliver elimination, and guaranteed gradation and size optimality of the mesh as well termination of the FE-mesh process.
-* 2. '''Develop real-time non-rigid registration of MRI images to meet the time constrains imposed by neurosurgery.''' Specifically use cooperative hardware architectures (based on multi-core and GPUs) that can be easily deployed in (or next to) the Operating Room without hindering routine surgery procedures to implement real-time non-rigid registration software which is accurate and robust.
+#'''Develop real-time non-rigid registration of MRI images to meet the time constrains imposed by neurosurgery.''' Specifically use cooperative hardware architectures (based on multi-core and GPUs) that can be easily deployed in (or next to) the Operating Room without hindering routine surgery procedures to implement real-time non-rigid registration software which is accurate and robust.
-* 3. '''Improve accuracy of non-rigid registration of brain MRI by utilizing the resources of the TeraGrid infrastructure.'''  Our first objective is to perform a feasibility study to exploit the use distributed grid computing resources in order to provide computational platform for image processing during image-guided neurosurgery. In addition we want to demonstrate that we can utilize the vast resources of nation-wide platforms like the TeraGrid to facilitate large experimental studies of image processing algorithms to improve our understanding of their behavior under different inputs.
+#'''Improve accuracy of non-rigid registration of brain MRI by utilizing the resources of the TeraGrid infrastructure.'''  Our first objective is to perform a feasibility study to exploit the use distributed grid computing resources in order to provide computational platform for image processing during image-guided neurosurgery. In addition we want to demonstrate that we can utilize the vast resources of nation-wide platforms like the TeraGrid to facilitate large experimental studies of image processing algorithms to improve our understanding of their behavior under different inputs.
 ==Grant==