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Collaboration:GT - Revision history
2026-05-04T03:12:47Z
Revision history for this page on the wiki
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Andy: Update from Wiki
2006-12-18T13:58:37Z
<p>Update from Wiki</p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 13:58, 18 December 2006</td>
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<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>= <del class="diffchange diffchange-inline">Georgia Tech (Core 1) & UC-Irvine (Core 3) Collaboration </del>=</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=<ins class="diffchange diffchange-inline">= Goal =</ins>=</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Logistics ===</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Finish Programming Week #1 Project: [[Engineering:Project:Bayesian_Segmentation|Bayesian Classification ITK Filter]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Wrap the filter in VTK for eventual use in Slicer</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Dates: December 17, 2005 <br />Place: Georgia Tech <br />Attendees:</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== Activities ==</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Allen Tannenbaum (Georgia Tech,Core 1)</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Thursday and Friday collaborative programming work</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Delphine Nain (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># [[User:Melonakos|John Melonakos]] (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Ramsey Al-Hakim (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Tauseef ur Rehman (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Shawn Lankton (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Eric Pichon (Georgia Tech, Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim Fallon (UCI,Core 3)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==<del class="diffchange diffchange-inline">= Agenda =</del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== <ins class="diffchange diffchange-inline">Results </ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''All'''<nowiki>: Discussion with </nowiki>'''Jim Fallon''' on neuroanatomy, in particular to get more deep insight on the striatum and DLPFC/DMPFC structures and the rules. Write biological motivation section of the DLPFC SPIE 2006 paper.</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* The itkBayesianClassificationImageFilter is now </ins>a part of <ins class="diffchange diffchange-inline">ITK CVS</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''Delphine''' and '''Ramsey''' show '''Jim''' how to use [[SoftwareInventory#3D_Slicer|Slicer]] for manual segmentations and obtain expert ground truth segmentation of </del>a <del class="diffchange diffchange-inline">few slices of the Putamen, DMPFC and DLPFC structures on 5 cases. This will be used for the validation </del>part of <del class="diffchange diffchange-inline">the DLPFC 2006 paper and future papers</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* The filter has been wrapped in VTK for use </ins>in <ins class="diffchange diffchange-inline">Slicer</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''Tauseef''' shows '''Jim''' the DMPFC/DLPFC segmenter Matlab program, </del>in <del class="diffchange diffchange-inline">order to validate the current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Accompanying documentation has been submitted </ins>to the <ins class="diffchange diffchange-inline">Insight Journal: An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''John''' shows '''Jim''' the Putamen segmenter program, in order </del>to <del class="diffchange diffchange-inline">validate </del>the <del class="diffchange diffchange-inline">current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==<del class="diffchange diffchange-inline">= Workshop Results =</del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== <ins class="diffchange diffchange-inline">Participants </ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">===== Specific Accomplishments =====</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Karthik Krishnan </ins>(<ins class="diffchange diffchange-inline">Kitware</ins>)</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Luis Ibanez </ins>(<ins class="diffchange diffchange-inline">Kitware</ins>)</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Allen trained Jim on 3D Revolver Software</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [[<ins class="diffchange diffchange-inline">User</ins>:<ins class="diffchange diffchange-inline">Melonakos</ins>|<ins class="diffchange diffchange-inline">John Melonakos</ins>]] <ins class="diffchange diffchange-inline">(Georgia Tech)</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Tauseef and Ramsey demonstrated the Matlab version of the DLPFC/DMPFC rule based segmentation software.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Delphine demonstrated the 3D Slicer viewer of raw data overlaid with labelmaps.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim presented lecture on the "Prefrontal Circuits".</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim manually segmented the DLPFC for 5 cases, will be used for validation.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim manually segmented the Pulvinar, and Medio-Dorsal </del>(<del class="diffchange diffchange-inline">MD</del>) <del class="diffchange diffchange-inline">Part of the Thalamus for future work.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">===== Important Discussions =====</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Common Knowledge When Segmenting Multiple Areas: For the Slicer RuleBacsedSegmentationModule, the user should have the option to segment single structures or combinations of structures. In the case of segmenting a combination of structures, the Module will have to be able to merge common information in an intelligent manner. For example, when segmenting the DLPFC and the DMPFC, it is important to recognize the common boundary shared by the two regions, instead of computing that boundary independently for each structure.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Bayesian Classification Options: When performing Bayesian Classification, we should include a slide bar to allow the user to adjust the kmeans calulated means and standard deviations of the classes.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* DLPFC Buffer Zone: There is a likely zone of interest surrounding the DLPFC which is a buffer between the DLPFC and surrounding regions. In the DLPFC SubModule, provide the user with the option to create this buffer region as a percentage of areas on each side of the DLPFC cortical surface rhombus.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* General Zooming Options: Provide the user with the ability to zoom arbitrarily when performing the segmentations and do not base region of calculation on the level of zoom.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Local Probabilistic Morphological Operations: Provide the ability to dilate/erode areas of the resulting segmentation in order to manually tweak results to better fit the data.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Striatal Bridges </del>(<del class="diffchange diffchange-inline">in the Interior Capsule</del>)<del class="diffchange diffchange-inline">: Provide the option to segment the gray-matter striatal bridges from the interior capsule when segmenting striatal areas.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Action Items ===</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">GT will implement Fallon's Rules to Rule Base Segment all the areas of the prefrontal cortex, the pulvinar, and the MD.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Jim will continue to provide expert manual segmentations for these areas.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Pictures ===</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Neuroanatomy can be fun! Lots of drawing, a little bit of connecting the dots, some head scratching, but in the end, we all learned the ABC of neuroanatomy :)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">To see full size, click on the bottom right icon below each picture.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06140.JPG|[[Image:600px-Gatech_121705_DSC06140.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right"></del>[[<del class="diffchange diffchange-inline">Image</del>:<del class="diffchange diffchange-inline">Gatech_121705_DSC06140.JPG</del>|<del class="diffchange diffchange-inline">[[Image:magnify-clip.png|Enlarge</del>]]<del class="diffchange diffchange-inline">]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06141.JPG|[[Image:600px-Gatech_121705_DSC06141.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06141.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06142.JPG|[[Image:600px-Gatech_121705_DSC06142.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06142.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06143.JPG|[[Image:600px-Gatech_121705_DSC06143.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06143.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06144.JPG|[[Image:600px-Gatech_121705_DSC06144.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06144.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06145.JPG|[[Image:600px-Gatech_121705_DSC06145.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06145.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06146.JPG|[[Image:600px-Gatech_121705_DSC06146.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06146.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06147.JPG|[[Image:600px-Gatech_121705_DSC06147.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06147.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06148.JPG|[[Image:600px-Gatech_121705_DSC06148.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06148.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06150.JPG|[[Image:600px-Gatech_121705_DSC06150.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06150.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06151.JPG|[[Image:600px-Gatech_121705_DSC06151.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06151.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06152.JPG|[[Image:600px-Gatech_121705_DSC06152.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06152.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06153.JPG|[[Image:600px-Gatech_121705_DSC06153.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06153.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06154.JPG|[[Image:600px-Gatech_121705_DSC06154.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06154.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06157.JPG|[[Image:600px-Gatech_121705_DSC06157.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06157.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06158.JPG|[[Image:600px-Gatech_121705_DSC06158.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06158.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06160.JPG|[[Image:600px-Gatech_121705_DSC06160.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06160.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06161.JPG|[[Image:600px-Gatech_121705_DSC06161.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06161.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06162.JPG|[[Image:600px-Gatech_121705_DSC06162.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06162.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06163.JPG|[[Image:600px-Gatech_121705_DSC06163.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06163.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06164.JPG|[[Image:600px-Gatech_121705_DSC06164.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06164.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06165.JPG|[[Image:600px-Gatech_121705_DSC06165.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06165.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06168.JPG|[[Image:600px-Gatech_121705_DSC06168.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06168.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06169.JPG|[[Image:600px-Gatech_121705_DSC06169.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06169.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06171.JPG|[[Image:600px-Gatech_121705_DSC06171.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06171.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06172.JPG|[[Image:600px-Gatech_121705_DSC06172.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06172.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06174.JPG|[[Image:600px-Gatech_121705_DSC06174.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06174.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div></del></div></td><td colspan="2"> </td></tr>
</table>
Andy
https://www.na-mic.org/w/index.php?title=Collaboration:GT&diff=4452&oldid=prev
Andy: Update from Wiki
2006-12-18T13:58:36Z
<p>Update from Wiki</p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 13:58, 18 December 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>=<del class="diffchange diffchange-inline">= Goal =</del>=</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>= <ins class="diffchange diffchange-inline">Georgia Tech (Core 1) & UC-Irvine (Core 3) Collaboration </ins>=</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Finish Programming Week #1 Project: [[Engineering:Project:Bayesian_Segmentation|Bayesian Classification ITK Filter]]</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== Logistics ===</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Wrap the filter in VTK for eventual use in Slicer</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">== Activities ==</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Dates: December 17, 2005 <br />Place: Georgia Tech <br />Attendees:</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Thursday and Friday collaborative programming work</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Allen Tannenbaum (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Delphine Nain (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># [[User:Melonakos|John Melonakos]] (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Ramsey Al-Hakim (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Tauseef ur Rehman (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Shawn Lankton (Georgia Tech,Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Eric Pichon (Georgia Tech, Core 1)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Jim Fallon (UCI,Core 3)</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>== <del class="diffchange diffchange-inline">Results </del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==<ins class="diffchange diffchange-inline">= Agenda =</ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* The itkBayesianClassificationImageFilter is now </del>a part of <del class="diffchange diffchange-inline">ITK CVS</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># '''All'''<nowiki>: Discussion with </nowiki>'''Jim Fallon''' on neuroanatomy, in particular to get more deep insight on the striatum and DLPFC/DMPFC structures and the rules. Write biological motivation section of the DLPFC SPIE 2006 paper.</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* The filter has been wrapped </del>in <del class="diffchange diffchange-inline">VTK for use in Slicer</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># '''Delphine''' and '''Ramsey''' show '''Jim''' how to use [[SoftwareInventory#3D_Slicer|Slicer]] for manual segmentations and obtain expert ground truth segmentation of </ins>a <ins class="diffchange diffchange-inline">few slices of the Putamen, DMPFC and DLPFC structures on 5 cases. This will be used for the validation </ins>part of <ins class="diffchange diffchange-inline">the DLPFC 2006 paper and future papers</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Accompanying documentation has been submitted </del>to the <del class="diffchange diffchange-inline">Insight Journal: An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># '''Tauseef''' shows '''Jim''' the DMPFC/DLPFC segmenter Matlab program, </ins>in <ins class="diffchange diffchange-inline">order to validate the current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help</ins>.</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># '''John''' shows '''Jim''' the Putamen segmenter program, in order </ins>to <ins class="diffchange diffchange-inline">validate </ins>the <ins class="diffchange diffchange-inline">current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help.</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>== <del class="diffchange diffchange-inline">Participants </del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>==<ins class="diffchange diffchange-inline">= Workshop Results =</ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Karthik Krishnan </del>(<del class="diffchange diffchange-inline">Kitware</del>)</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">===== Specific Accomplishments =====</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Luis Ibanez </del>(<del class="diffchange diffchange-inline">Kitware</del>)</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [[<del class="diffchange diffchange-inline">User</del>:<del class="diffchange diffchange-inline">Melonakos</del>|<del class="diffchange diffchange-inline">John Melonakos</del>]] <del class="diffchange diffchange-inline">(Georgia Tech)</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Allen trained Jim on 3D Revolver Software</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Tauseef and Ramsey demonstrated the Matlab version of the DLPFC/DMPFC rule based segmentation software.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Delphine demonstrated the 3D Slicer viewer of raw data overlaid with labelmaps.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Jim presented lecture on the "Prefrontal Circuits".</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Jim manually segmented the DLPFC for 5 cases, will be used for validation.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"># Jim manually segmented the Pulvinar, and Medio-Dorsal </ins>(<ins class="diffchange diffchange-inline">MD</ins>) <ins class="diffchange diffchange-inline">Part of the Thalamus for future work.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">===== Important Discussions =====</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Common Knowledge When Segmenting Multiple Areas: For the Slicer RuleBacsedSegmentationModule, the user should have the option to segment single structures or combinations of structures. In the case of segmenting a combination of structures, the Module will have to be able to merge common information in an intelligent manner. For example, when segmenting the DLPFC and the DMPFC, it is important to recognize the common boundary shared by the two regions, instead of computing that boundary independently for each structure.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Bayesian Classification Options: When performing Bayesian Classification, we should include a slide bar to allow the user to adjust the kmeans calulated means and standard deviations of the classes.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* DLPFC Buffer Zone: There is a likely zone of interest surrounding the DLPFC which is a buffer between the DLPFC and surrounding regions. In the DLPFC SubModule, provide the user with the option to create this buffer region as a percentage of areas on each side of the DLPFC cortical surface rhombus.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* General Zooming Options: Provide the user with the ability to zoom arbitrarily when performing the segmentations and do not base region of calculation on the level of zoom.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Local Probabilistic Morphological Operations: Provide the ability to dilate/erode areas of the resulting segmentation in order to manually tweak results to better fit the data.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Striatal Bridges </ins>(<ins class="diffchange diffchange-inline">in the Interior Capsule</ins>)<ins class="diffchange diffchange-inline">: Provide the option to segment the gray-matter striatal bridges from the interior capsule when segmenting striatal areas.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== Action Items ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">GT will implement Fallon's Rules to Rule Base Segment all the areas of the prefrontal cortex, the pulvinar, and the MD.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Jim will continue to provide expert manual segmentations for these areas.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">=== Pictures ===</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">Neuroanatomy can be fun! Lots of drawing, a little bit of connecting the dots, some head scratching, but in the end, we all learned the ABC of neuroanatomy :)</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">To see full size, click on the bottom right icon below each picture.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline"><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06140.JPG|[[Image:600px-Gatech_121705_DSC06140.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right"></ins>[[<ins class="diffchange diffchange-inline">Image</ins>:<ins class="diffchange diffchange-inline">Gatech_121705_DSC06140.JPG</ins>|<ins class="diffchange diffchange-inline">[[Image:magnify-clip.png|Enlarge]]</ins>]]<ins class="diffchange diffchange-inline"></div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06141.JPG|[[Image:600px-Gatech_121705_DSC06141.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06141.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06142.JPG|[[Image:600px-Gatech_121705_DSC06142.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06142.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06143.JPG|[[Image:600px-Gatech_121705_DSC06143.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06143.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06144.JPG|[[Image:600px-Gatech_121705_DSC06144.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06144.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06145.JPG|[[Image:600px-Gatech_121705_DSC06145.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06145.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06146.JPG|[[Image:600px-Gatech_121705_DSC06146.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06146.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06147.JPG|[[Image:600px-Gatech_121705_DSC06147.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06147.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06148.JPG|[[Image:600px-Gatech_121705_DSC06148.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06148.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06150.JPG|[[Image:600px-Gatech_121705_DSC06150.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06150.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06151.JPG|[[Image:600px-Gatech_121705_DSC06151.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06151.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06152.JPG|[[Image:600px-Gatech_121705_DSC06152.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06152.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06153.JPG|[[Image:600px-Gatech_121705_DSC06153.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06153.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06154.JPG|[[Image:600px-Gatech_121705_DSC06154.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06154.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06157.JPG|[[Image:600px-Gatech_121705_DSC06157.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06157.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06158.JPG|[[Image:600px-Gatech_121705_DSC06158.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06158.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06160.JPG|[[Image:600px-Gatech_121705_DSC06160.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06160.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06161.JPG|[[Image:600px-Gatech_121705_DSC06161.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06161.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06162.JPG|[[Image:600px-Gatech_121705_DSC06162.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06162.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06163.JPG|[[Image:600px-Gatech_121705_DSC06163.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06163.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06164.JPG|[[Image:600px-Gatech_121705_DSC06164.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06164.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06165.JPG|[[Image:600px-Gatech_121705_DSC06165.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06165.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06168.JPG|[[Image:600px-Gatech_121705_DSC06168.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06168.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06169.JPG|[[Image:600px-Gatech_121705_DSC06169.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06169.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06171.JPG|[[Image:600px-Gatech_121705_DSC06171.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06171.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06172.JPG|[[Image:600px-Gatech_121705_DSC06172.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06172.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06174.JPG|[[Image:600px-Gatech_121705_DSC06174.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06174.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div></ins></div></td></tr>
</table>
Andy
https://www.na-mic.org/w/index.php?title=Collaboration:GT&diff=3465&oldid=prev
Andy: Update from Wiki
2006-12-18T13:23:11Z
<p>Update from Wiki</p>
<table class="diff diff-contentalign-left" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 13:23, 18 December 2006</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>= <del class="diffchange diffchange-inline">Georgia Tech (Core 1) & UC-Irvine (Core 3) Collaboration </del>=</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>=<ins class="diffchange diffchange-inline">= Goal =</ins>=</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Logistics ===</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Finish Programming Week #1 Project: [[Engineering:Project:Bayesian_Segmentation|Bayesian Classification ITK Filter]]</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Wrap the filter in VTK for eventual use in Slicer</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Dates: December 17, 2005 <br />Place: Georgia Tech <br />Attendees:</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">== Activities ==</ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Allen Tannenbaum (Georgia Tech,Core 1)</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Thursday and Friday collaborative programming work</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Delphine Nain (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># [[User:Melonakos|John Melonakos]] (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Ramsey Al-Hakim (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Tauseef ur Rehman (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Shawn Lankton (Georgia Tech,Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Eric Pichon (Georgia Tech, Core 1)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim Fallon (UCI,Core 3)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==<del class="diffchange diffchange-inline">= Agenda =</del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== <ins class="diffchange diffchange-inline">Results </ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''All'''<nowiki>: Discussion with </nowiki>'''Jim Fallon''' on neuroanatomy, in particular to get more deep insight on the striatum and DLPFC/DMPFC structures and the rules. Write biological motivation section of the DLPFC SPIE 2006 paper.</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* The itkBayesianClassificationImageFilter is now </ins>a part of <ins class="diffchange diffchange-inline">ITK CVS</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''Delphine''' and '''Ramsey''' show '''Jim''' how to use [[SoftwareInventory#3D_Slicer|Slicer]] for manual segmentations and obtain expert ground truth segmentation of </del>a <del class="diffchange diffchange-inline">few slices of the Putamen, DMPFC and DLPFC structures on 5 cases. This will be used for the validation </del>part of <del class="diffchange diffchange-inline">the DLPFC 2006 paper and future papers</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* The filter has been wrapped in VTK for use </ins>in <ins class="diffchange diffchange-inline">Slicer</ins>.</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''Tauseef''' shows '''Jim''' the DMPFC/DLPFC segmenter Matlab program, </del>in <del class="diffchange diffchange-inline">order to validate the current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help</del>.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Accompanying documentation has been submitted </ins>to the <ins class="diffchange diffchange-inline">Insight Journal: An ITK Filter for Bayesian Segmentation: itkBayesianClassifierImageFilter</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># '''John''' shows '''Jim''' the Putamen segmenter program, in order </del>to <del class="diffchange diffchange-inline">validate </del>the <del class="diffchange diffchange-inline">current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>==<del class="diffchange diffchange-inline">= Workshop Results =</del>==</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>== <ins class="diffchange diffchange-inline">Participants </ins>==</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">===== Specific Accomplishments =====</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">* Karthik Krishnan </ins>(<ins class="diffchange diffchange-inline">Kitware</ins>)</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* <ins class="diffchange diffchange-inline">Luis Ibanez </ins>(<ins class="diffchange diffchange-inline">Kitware</ins>)</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Allen trained Jim on 3D Revolver Software</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [[<ins class="diffchange diffchange-inline">User</ins>:<ins class="diffchange diffchange-inline">Melonakos</ins>|<ins class="diffchange diffchange-inline">John Melonakos</ins>]] <ins class="diffchange diffchange-inline">(Georgia Tech)</ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Tauseef and Ramsey demonstrated the Matlab version of the DLPFC/DMPFC rule based segmentation software.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Delphine demonstrated the 3D Slicer viewer of raw data overlaid with labelmaps.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim presented lecture on the "Prefrontal Circuits".</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim manually segmented the DLPFC for 5 cases, will be used for validation.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"># Jim manually segmented the Pulvinar, and Medio-Dorsal </del>(<del class="diffchange diffchange-inline">MD</del>) <del class="diffchange diffchange-inline">Part of the Thalamus for future work.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">===== Important Discussions =====</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">Common Knowledge When Segmenting Multiple Areas: For the Slicer RuleBacsedSegmentationModule, the user should have the option to segment single structures or combinations of structures. In the case of segmenting a combination of structures, the Module will have to be able to merge common information in an intelligent manner. For example, when segmenting the DLPFC and the DMPFC, it is important to recognize the common boundary shared by the two regions, instead of computing that boundary independently for each structure.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Bayesian Classification Options: When performing Bayesian Classification, we should include a slide bar to allow the user to adjust the kmeans calulated means and standard deviations of the classes.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* DLPFC Buffer Zone: There is a likely zone of interest surrounding the DLPFC which is a buffer between the DLPFC and surrounding regions. In the DLPFC SubModule, provide the user with the option to create this buffer region as a percentage of areas on each side of the DLPFC cortical surface rhombus.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* General Zooming Options: Provide the user with the ability to zoom arbitrarily when performing the segmentations and do not base region of calculation on the level of zoom.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Local Probabilistic Morphological Operations: Provide the ability to dilate/erode areas of the resulting segmentation in order to manually tweak results to better fit the data.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Striatal Bridges </del>(<del class="diffchange diffchange-inline">in the Interior Capsule</del>)<del class="diffchange diffchange-inline">: Provide the option to segment the gray-matter striatal bridges from the interior capsule when segmenting striatal areas.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Action Items ===</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* <del class="diffchange diffchange-inline">GT will implement Fallon's Rules to Rule Base Segment all the areas of the prefrontal cortex, the pulvinar, and the MD.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">* Jim will continue to provide expert manual segmentations for these areas.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">=== Pictures ===</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Neuroanatomy can be fun! Lots of drawing, a little bit of connecting the dots, some head scratching, but in the end, we all learned the ABC of neuroanatomy :)</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">To see full size, click on the bottom right icon below each picture.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline"><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06140.JPG|[[Image:600px-Gatech_121705_DSC06140.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right"></del>[[<del class="diffchange diffchange-inline">Image</del>:<del class="diffchange diffchange-inline">Gatech_121705_DSC06140.JPG</del>|<del class="diffchange diffchange-inline">[[Image:magnify-clip.png|Enlarge</del>]]<del class="diffchange diffchange-inline">]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06141.JPG|[[Image:600px-Gatech_121705_DSC06141.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06141.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06142.JPG|[[Image:600px-Gatech_121705_DSC06142.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06142.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06143.JPG|[[Image:600px-Gatech_121705_DSC06143.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06143.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06144.JPG|[[Image:600px-Gatech_121705_DSC06144.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06144.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06145.JPG|[[Image:600px-Gatech_121705_DSC06145.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06145.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06146.JPG|[[Image:600px-Gatech_121705_DSC06146.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06146.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06147.JPG|[[Image:600px-Gatech_121705_DSC06147.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06147.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06148.JPG|[[Image:600px-Gatech_121705_DSC06148.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06148.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06150.JPG|[[Image:600px-Gatech_121705_DSC06150.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06150.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06151.JPG|[[Image:600px-Gatech_121705_DSC06151.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06151.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06152.JPG|[[Image:600px-Gatech_121705_DSC06152.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06152.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06153.JPG|[[Image:600px-Gatech_121705_DSC06153.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06153.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06154.JPG|[[Image:600px-Gatech_121705_DSC06154.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06154.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06157.JPG|[[Image:600px-Gatech_121705_DSC06157.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06157.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06158.JPG|[[Image:600px-Gatech_121705_DSC06158.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06158.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06160.JPG|[[Image:600px-Gatech_121705_DSC06160.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06160.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06161.JPG|[[Image:600px-Gatech_121705_DSC06161.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06161.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06162.JPG|[[Image:600px-Gatech_121705_DSC06162.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06162.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06163.JPG|[[Image:600px-Gatech_121705_DSC06163.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06163.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06164.JPG|[[Image:600px-Gatech_121705_DSC06164.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06164.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06165.JPG|[[Image:600px-Gatech_121705_DSC06165.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06165.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06168.JPG|[[Image:600px-Gatech_121705_DSC06168.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06168.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06169.JPG|[[Image:600px-Gatech_121705_DSC06169.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06169.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06171.JPG|[[Image:600px-Gatech_121705_DSC06171.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06171.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06172.JPG|[[Image:600px-Gatech_121705_DSC06172.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06172.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div><div class="thumb tright"><div style="width: 602px">[[Image:Gatech_121705_DSC06174.JPG|[[Image:600px-Gatech_121705_DSC06174.JPG]]]]<div class="thumbcaption"><div class="magnify" style="float: right">[[Image:Gatech_121705_DSC06174.JPG|[[Image:magnify-clip.png|Enlarge]]]]</div></div></div></div></del></div></td><td colspan="2"> </td></tr>
</table>
Andy
https://www.na-mic.org/w/index.php?title=Collaboration:GT&diff=3464&oldid=prev
Andy: Update from Wiki
2006-12-18T13:23:08Z
<p>Update from Wiki</p>
<p><b>New page</b></p><div>= Georgia Tech (Core 1) & UC-Irvine (Core 3) Collaboration =<br />
<br />
=== Logistics ===<br />
<br />
Dates: December 17, 2005 <br />Place: Georgia Tech <br />Attendees:<br />
<br />
# Allen Tannenbaum (Georgia Tech,Core 1)<br />
# Delphine Nain (Georgia Tech,Core 1)<br />
# [[User:Melonakos|John Melonakos]] (Georgia Tech,Core 1)<br />
# Ramsey Al-Hakim (Georgia Tech,Core 1)<br />
# Tauseef ur Rehman (Georgia Tech,Core 1)<br />
# Shawn Lankton (Georgia Tech,Core 1)<br />
# Eric Pichon (Georgia Tech, Core 1)<br />
# Jim Fallon (UCI,Core 3)<br />
<br />
=== Agenda ===<br />
<br />
# '''All'''<nowiki>: Discussion with </nowiki>'''Jim Fallon''' on neuroanatomy, in particular to get more deep insight on the striatum and DLPFC/DMPFC structures and the rules. Write biological motivation section of the DLPFC SPIE 2006 paper.<br />
# '''Delphine''' and '''Ramsey''' show '''Jim''' how to use [[SoftwareInventory#3D_Slicer|Slicer]] for manual segmentations and obtain expert ground truth segmentation of a few slices of the Putamen, DMPFC and DLPFC structures on 5 cases. This will be used for the validation part of the DLPFC 2006 paper and future papers.<br />
# '''Tauseef''' shows '''Jim''' the DMPFC/DLPFC segmenter Matlab program, in order to validate the current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help.<br />
# '''John''' shows '''Jim''' the Putamen segmenter program, in order to validate the current segmentations and get input from the prototype. If time permits, produce more segmentations with Jim's help.<br />
<br />
=== Workshop Results ===<br />
<br />
===== Specific Accomplishments =====<br />
<br />
# Allen trained Jim on 3D Revolver Software<br />
# Tauseef and Ramsey demonstrated the Matlab version of the DLPFC/DMPFC rule based segmentation software.<br />
# Delphine demonstrated the 3D Slicer viewer of raw data overlaid with labelmaps.<br />
# Jim presented lecture on the "Prefrontal Circuits".<br />
# Jim manually segmented the DLPFC for 5 cases, will be used for validation.<br />
# Jim manually segmented the Pulvinar, and Medio-Dorsal (MD) Part of the Thalamus for future work.<br />
<br />
===== Important Discussions =====<br />
<br />
* Common Knowledge When Segmenting Multiple Areas: For the Slicer RuleBacsedSegmentationModule, the user should have the option to segment single structures or combinations of structures. In the case of segmenting a combination of structures, the Module will have to be able to merge common information in an intelligent manner. For example, when segmenting the DLPFC and the DMPFC, it is important to recognize the common boundary shared by the two regions, instead of computing that boundary independently for each structure.<br />
* Bayesian Classification Options: When performing Bayesian Classification, we should include a slide bar to allow the user to adjust the kmeans calulated means and standard deviations of the classes.<br />
* DLPFC Buffer Zone: There is a likely zone of interest surrounding the DLPFC which is a buffer between the DLPFC and surrounding regions. In the DLPFC SubModule, provide the user with the option to create this buffer region as a percentage of areas on each side of the DLPFC cortical surface rhombus.<br />
* General Zooming Options: Provide the user with the ability to zoom arbitrarily when performing the segmentations and do not base region of calculation on the level of zoom.<br />
* Local Probabilistic Morphological Operations: Provide the ability to dilate/erode areas of the resulting segmentation in order to manually tweak results to better fit the data.<br />
* Striatal Bridges (in the Interior Capsule): Provide the option to segment the gray-matter striatal bridges from the interior capsule when segmenting striatal areas.<br />
<br />
=== Action Items ===<br />
<br />
* GT will implement Fallon's Rules to Rule Base Segment all the areas of the prefrontal cortex, the pulvinar, and the MD.<br />
* Jim will continue to provide expert manual segmentations for these areas.<br />
<br />
=== Pictures ===<br />
<br />
Neuroanatomy can be fun! Lots of drawing, a little bit of connecting the dots, some head scratching, but in the end, we all learned the ABC of neuroanatomy :)<br />
<br />
To see full size, click on the bottom right icon below each picture.<br />
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