Collaboration:Marburg - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:10:04Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: /* Publications */

2016-12-14T17:24:45Z

Publications

Egger: /* Publications */

2011-08-12T11:49:32Z

Publications

Kikinis at 18:56, 26 July 2011

2011-07-26T18:56:38Z

Kikinis at 18:49, 26 July 2011

2011-07-26T18:49:53Z

Kikinis: /* GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery */

2011-07-26T18:49:19Z

GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery

Egger: /* GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery */

2011-06-16T16:12:45Z

GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery

Fedorov: /* Study Design */

2011-06-16T15:33:56Z

Study Design

Fedorov at 15:33, 16 June 2011

2011-06-16T15:33:27Z

Fedorov: /* Study Design */

2011-06-16T15:32:16Z

Study Design

@@ Line 62: / Line 62: @@
 #3D Slicer (http://www.slicer.org/)
-#GrowCutSegmentation (http://www.slicer.org/slicerWiki/index.php/Modules:GrowCutSegmentation-Documentation-3.6)
+#GrowCutSegmentation (https://www.slicer.org/wiki/Modules:GrowCutSegmentation-Documentation-3.6)
 #Neurosurgery Department of Marburg (http://www.ukgm.de/ugm_2/deu/umr_nch/umr_nch_team.php?id=767)

@@ Line 51: / Line 51: @@
 ==Publications==
-#J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky, A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data, Journal of Medical Systems, Springer, Mar. 2011.
+#Egger J, Kappus C, Freisleben B, Nimsky C. A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data. J Med Syst. 2012 Aug;36(4):2097-109. PubMed PMID: 21384268.
 #J. Egger, Dz. Zukic, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky, A Comparison of Two Human Brain Tumor Segmentation Methods for MRI Data, Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
 #Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky, Glioblastoma Multiforme Segmentation in MRI Data with a Balloon Inflation Approach, Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
@@ Line 57: / Line 57: @@
 #J. Egger, M. H. A. Bauer, D. Kuhnt, B. Freisleben, Ch. Nimsky, Min-Cut-Segmentation of WHO Grade IV Gliomas Evaluated against Manual Segmentation, XIX Congress of the European Society for Stereotactic and Functional Neurosurgery, Athens, Greece, Sep. 2010.
 #J. Egger, M. H. A. Bauer, D. Kuhnt, B. Carl, C. Kappus, B. Freisleben, Ch. Nimsky, Nugget-Cut: A Segmentation Scheme for Spherically- and Elliptically-Shaped 3D Objects, 32nd Annual Symposium of the German Association for Pattern Recognition (DAGM), LNCS 6376, pp. 383–392, Springer Press, Darmstadt, Germany, Sep. 2010.
-#J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky. A Flexible Semi-Automatic Approach for Glioblastoma multiforme Segmentation. Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
+#J. Egger, M. H. A. Bauer, D. Kuhnt, C. Kappus, B. Carl, B. Freisleben, Ch. Nimsky. A Flexible Semi-Automatic Approach for Glioblastoma Multiforme Segmentation. Proceedings of International Biosignal Processing Conference, Charité, Berlin, Germany, Jul. 2010.
 ==Resource Links==

@@ Line 51: / Line 51: @@
 ==Publications==
-#J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky, A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data“, Journal of Medical Systems, Springer, Mar. 2011.
+#J. Egger, C. Kappus, B. Freisleben, Ch. Nimsky, A Medical Software System for Volumetric Analysis of Cerebral Pathologies in Magnetic Resonance Imaging (MRI) Data, Journal of Medical Systems, Springer, Mar. 2011.
 #J. Egger, Dz. Zukic, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky, A Comparison of Two Human Brain Tumor Segmentation Methods for MRI Data, Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.
 #Dz. Zukic, J. Egger, M.H.A. Bauer, D. Kuhnt, B. Carl, B. Freisleben, A. Kolb, Ch. Nimsky, Glioblastoma Multiforme Segmentation in MRI Data with a Balloon Inflation Approach, Proceedings of 6th Russian-Bavarian Conference on Bio-Medical Engineering, State Technical University, Moscow, Russia, Nov. 2010.

← Older revision		Revision as of 18:56, 26 July 2011
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−	[[image:Marburg-Logo-2011.png\|right\|thumb\|400px\|~~logo~~ of the University of Marburg]]	+	[[image:Marburg-Logo-2011.png\|right\|thumb\|400px\|Logo of the University of Marburg]]
	=GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery=		=GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery=

← Older revision		Revision as of 18:49, 26 July 2011
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−	[[image:Marburg-Logo-2011.png\|right\|thumb\|~~300px~~]]	+	[[image:Marburg-Logo-2011.png\|right\|thumb\|400px\|logo of the University of Marburg]]
	=GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery=		=GBM Segmentation: Glioblastoma multiforme Segmentation under 3D Slicer for Neurosurgery=

@@ Line 10: / Line 10: @@
 Key Personnel
-#NA-MIC, NCIGT: Andriy Fedorov, Tina Kapur, Ron Kikinis, Alexandra Golby
+#NA-MIC, NCIGT: Andriy Fedorov, Tina Kapur, Ron Kikinis, Rivka Colen, Alexandra Golby
 #University Hospital of Marburg, Germany: Jan Egger, Bernd Freisleben, Christopher Nimsky

@@ Line 38: / Line 38: @@
 # measure time and calculate DSC
 # Optional: provide data and segmentation masks to the research community
-|[[Image:Marburg_GBM_segmentation_example.png|400px|An example segmentation obtained for a challenging case of GBM from Marburg]]
+|[[Image:Marburg_GBM_segmentation_example.png|thumb|400px|An example segmentation obtained for a challenging case of GBM from Marburg]]
 |}

@@ Line 26: / Line 26: @@
 ** quality of the overlap with the manual segmentations
-Proposed study workflow:
+{|
 # JE to select ~5 out of 50 representative cases of GBM
 # AF to try the existing Slicer tools to segment these cases while looking at the segmentations prepared by the experts.
@@ Line 37: / Line 38: @@
 # measure time and calculate DSC
 # Optional: provide data and segmentation masks to the research community
 Next steps: