DBP2:Harvard - Revision history

Yrathi: /* Other Harvard-NAMIC Collaboration Projects */

2010-05-13T17:04:34Z

Other Harvard-NAMIC Collaboration Projects

Petersv: /* Local white matter geometry from diffusion tensor gradients */

2010-02-12T22:10:27Z

Local white matter geometry from diffusion tensor gradients

Petersv: /* Other Harvard-NAMIC Collaboration Projects */

2010-02-12T22:09:52Z

Other Harvard-NAMIC Collaboration Projects

Dougt: /* Other Harvard-NAMIC Collaboration Projects */

2010-02-11T19:21:55Z

Other Harvard-NAMIC Collaboration Projects

Melonakos at 19:11, 11 July 2009

2009-07-11T19:11:46Z

Melonakos at 19:09, 11 July 2009

2009-07-11T19:09:36Z

Melonakos at 19:09, 11 July 2009

2009-07-11T19:09:27Z

Melonakos at 19:08, 11 July 2009

2009-07-11T19:08:40Z

Rauscha at 14:54, 21 April 2009

2009-04-21T14:54:31Z

Kubicki at 00:36, 22 December 2008

2008-12-22T00:36:53Z

← Older revision		Revision as of 17:04, 13 May 2010
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	[[http://pnl.bwh.harvard.edu/pub/papers_html/SavadjievNeuroImage10.html Local white matter geometry from diffusion tensor gradients. P. Savadjiev, G. L. Kindlmann, S. Bouix, M. E. Shenton, C-F Westin, NeuroImage 2010. ]]		[[http://pnl.bwh.harvard.edu/pub/papers_html/SavadjievNeuroImage10.html Local white matter geometry from diffusion tensor gradients. P. Savadjiev, G. L. Kindlmann, S. Bouix, M. E. Shenton, C-F Westin, NeuroImage 2010. ]]
		+
		+	\|}
		+
		+	{\| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
		+
		+	\| style="width:1700px" \|
		+
		+	== [[Projects:MultiTensorTractography\| Multi-Tensor Tractography]] ==
		+	We are developing a novel framework for performing simultaneous multi-fiber model estimation and tractography. This is a unified framework
		+	that allows for using any type of parametric or nonparametric model to perform tractography.
		+
		+	[[http://pnl.bwh.harvard.edu/pub/papers_html/MalcolmInfProc09.html Neural tractography using an unscented Kalman filter. J. Malcolm, M. E. Shenton and Y. Rathi]]

	\|}		\|}

@@ Line 40: / Line 40: @@
 We are investigating methods for computing local white matter geometrical properties using a differential analysis of diffusion tensor fields. We are also investigating their applications in the context of schizophrenia research.
-[[http://pnl.bwh.harvard.edu/pub/papers_html/SavadjievNeuroImage10.html Local white matter geometry from diffusion tensor gradients. P. Savadjiev, G. L. Kindlmann, S. Bouix, M. E. Shenton, C-F Westing, NeuroImage 2010. ]]
+[[http://pnl.bwh.harvard.edu/pub/papers_html/SavadjievNeuroImage10.html Local white matter geometry from diffusion tensor gradients. P. Savadjiev, G. L. Kindlmann, S. Bouix, M. E. Shenton, C-F Westin, NeuroImage 2010. ]]
 |}

← Older revision		Revision as of 22:09, 12 February 2010
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	= Other Harvard-NAMIC Collaboration Projects =		= Other Harvard-NAMIC Collaboration Projects =
		+
		+	; <font color="firebrick" font size="4"> LMI / PNL, Brigham & Women's Hospital </font>
		+
		+	{\| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
		+
		+	\| style="width:1700px" \|
		+
		+	== [[Projects:WhiteMatterGeometryDTGradients\| Local white matter geometry from diffusion tensor gradients]] ==
		+	We are investigating methods for computing local white matter geometrical properties using a differential analysis of diffusion tensor fields. We are also investigating their applications in the context of schizophrenia research.
		+
		+	[[http://pnl.bwh.harvard.edu/pub/papers_html/SavadjievNeuroImage10.html Local white matter geometry from diffusion tensor gradients. P. Savadjiev, G. L. Kindlmann, S. Bouix, M. E. Shenton, C-F Westing, NeuroImage 2010. ]]
		+
		+	\|}
		+
	; <font color="firebrick" font size="4"> GA Tech </font>		; <font color="firebrick" font size="4"> GA Tech </font>

← Older revision		Revision as of 19:21, 11 February 2010
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	[[http://pnl.bwh.harvard.edu/pub/papers_html/MelmohanMICCAI07.html Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle J. Melonakos, V. Mohan, M. Niethammer, K. Smith, M. Kubicki, A. Tannenbaum miccai 2007 ]]		[[http://pnl.bwh.harvard.edu/pub/papers_html/MelmohanMICCAI07.html Finsler Tractography for White Matter Connectivity Analysis of the Cingulum Bundle J. Melonakos, V. Mohan, M. Niethammer, K. Smith, M. Kubicki, A. Tannenbaum miccai 2007 ]]
		+
		+	\|-
		+	\| \|
		+
		+	== [[Projects:TubularSurfaceSegmentationPopStudy\| Tubular Surface Segmentation Population Study]] ==
		+	We are currently investigating Cingulum Bundle white matter properties between a population of schizophrenics and controls using using the Tubular Surface Model.
		+
		+	[[http://www.na-mic.org/publications/item/view/1571 Niethammer M., Zach C., Melonakos J., Tannenbaum A. Near-tubular fiber bundle segmentation for diffusion weighted imaging: segmentation through frame reorientation. Neuroimage. 2009 Mar;45(1 Suppl):S123-32. PMID: 19101640. PMCID: PMC2774769. ]]

	\|-		\|-

@@ Line 11: / Line 11: @@
 = Harvard Roadmap Project =
-{| cellpadding="10" border="1" style="background:lightblue" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightblue;text-align:left;"
 | style="width:200px" | [[Image:Arcuate_new.png|200px]]
@@ Line 32: / Line 32: @@
 ; <font color="firebrick" font size="4"> GA Tech </font>
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
 | style="width:1700px" |
@@ Line 66: / Line 66: @@
 ; <font color="firebrick" font size="4"> MIT </font>
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
@@ Line 110: / Line 110: @@
 ; <font color="firebrick" font size="4"> UNC </font>
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
@@ Line 122: / Line 122: @@
 ; <font color="firebrick" font size="4"> Utah 1 </font>
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
@@ Line 134: / Line 134: @@
 ; <font color="firebrick" font size="4"> Utah 2 </font>
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"
@@ Line 147: / Line 147: @@
 == Registration Documentation ==
-{| cellpadding="10" border="1" style="background:lightgray" style="text-align:left;"
+{| cellpadding="10" border="1" style="background:lightgray;text-align:left;"

@@ Line 1: / Line 1: @@
-Back to [[DBP2:Main|NA-MIC DBP 2]]
+ Back to [[DBP2:Main|NA-MIC DBP 2]]
 __NOTOC__
 = Overview of Harvard DBP 2 =

@@ Line 141: / Line 141: @@
 == [[Projects:DTIPopulationAnalysis| Population Analysis from Deformable Registration]] ==
 This project uses non-rigid registration of DTI images to produce a common coordinate system for hypothesis testing of diffusion properties. <font color="lightgray">  </font>
 |}

@@ Line 34: / Line 34: @@
 {| cellpadding="10" border="1" style="background:lightgray"
-| style="width:200px" |
+| style="width:1700px" |
 == [[Projects:OptimalMassTransportRegistration|EPI distortion correction using optimal mass transport.]] ==
@@ Line 41: / Line 40: @@
 |-
 | |
 == [[Projects:GeodesicTractographySegmentation| Geodesic Tractography Segmentation]] ==
 We are currently investigating Cingulum Bundle fractional anisotropy (FA) differences between a population of 12 schizophrenics and 12 normal controls using this new methodology.
 |-
 | |
 == [[Projects:LabelSpace| A Coupled Multi-Shape Representation]] ==
 We are currently using this technique to build an unbiased atlas for segmentation.
 [[http://users.ece.gatech.edu/~malcolm/pubs/malcolm_lss.pdf J. Malcolm, Y. Rathi, and A. Tannenbaum. "Label Space: A Multi-Object Shape Representation." In Combinatorial Image Analysis, 2008.]]
 |-
 | |
 == [[Projects:MultiscaleShapeAnalysis| Shape Analysis of the Caudate]] ==
 Multiscale shape analysis
-Y. Gao, D. Nain, M. Styner, M. Niethammer, J. J. Levitt, M E Shenton, G Gerig, A. Bobick, A. Tannenbaum. Framework for the Statistical Shape Analysis of Brain Structures using Spherical Wavelets. In preparation for the Insight Journal, February/March 2007.
 |}
@@ Line 73: / Line 68: @@
 {| cellpadding="10" border="1" style="background:lightgray"
-| style="width:200px" | [[Image:csail.jpg|left|100px]]
-| style="width:1500px" |
+| style="width:1700px" |
 == [[Projects:ShapeBasedSegmentationAndRegistration|Shape Based Segmentation and Registration]] ==
 We use this segmentation algorithm to process our entire data set.
-:[[http://pnl.bwh.harvard.edu/pub/papers_html/PohlIEEE07.html A Hierarchical Algorithm for MR Brain Image Parcellation, K. Pohl, S. Bouix, M. Nakamura, T. Rohlfing, R. McCarley, R. Kikinis, W. Grimson, M. E. Shenton, W. Wells, IEEE Transactions on Medical Imaging, Volume 26, Number 9, Pages 1201-1212, 2007 ]]
 |-
 | |
@@ Line 91: / Line 85: @@
 |-
 | |
 == [[Projects:DTIClustering| DTI Fiber Clustering and Fiber Based Analysis ]] ==
 The goal of this project is to provide structural description of the white matter architecture as a partition into coherent fiber bundles and clusters, and to use these bundles for quantitative measurement. We use this method in two ongoing projects- corpus callosum segmentation in chronic schizophrenia sample, and whole brain clustering in sample of first episode psychosis subjects.
 |-
 | |
 == [[Projects:DTIModeling| Fiber Tract Modeling, Clustering, and Quantitative Analysis ]] ==
 The goal of this project is to segment and parametrize fiber bundles for more precise group comparison. We use this method to segment and compare between controls and chronic schizophrenia population tracts belonging to inferior semantic processing stream (Inferior Longitudinal fasciculus, Uncinate Fasciculus and Inferior Occipito-Frontal Fasciculus). Manuscript is in preparation.
 |-
 | |
@@ Line 124: / Line 112: @@
 {| cellpadding="10" border="1" style="background:lightgray"
-| style="width:175px" | [[Image:UNC.jpg|75px]]
-| style="width:1500px" |
+| style="width:1700px" |
 == [[Projects:ShapeAnalysisFrameworkUsingSPHARMPDM| Shape Analysis Framework using SPHARM-PDM]] ==
-"Shape Abnormalities of Caudate Nucleus in Schizotypal Personality Disorder" has been accepted by Schizophrenia Research. James J. Levitt, Martin Styner, Marc Niethammer, Sylvain Bouix, Min-Seong Koo, Martina M. Voglmaier, Chandlee C. Dickey, Margaret A. Niznikiewicz, Ron Kikinis, Robert, W. McCarley, Martha E. Shenton.
+["Shape Abnormalities of Caudate Nucleus in Schizotypal Personality Disorder" has been accepted by Schizophrenia Research. James J. Levitt, Martin Styner, Marc Niethammer, Sylvain Bouix, Min-Seong Koo, Martina M. Voglmaier, Chandlee C. Dickey, Margaret A. Niznikiewicz, Ron Kikinis, Robert, W. McCarley, Martha E. Shenton.]
 <font color="lightgray">   </font>
 |}
@@ Line 136: / Line 124: @@
 {| cellpadding="10" border="1" style="background:lightgray"
-| style="width:200px" |
-| style="width:1500px" |
+| style="width:1700px" |
 == [[Projects:DTIProcessingTools| Diffusion Tensor Image Processing Tools]] ==
@@ Line 148: / Line 136: @@
 {| cellpadding="10" border="1" style="background:lightgray"
-| style="width:200px" |
-| style="width:1500px" |
+| style="width:1700px" |
 == [[Projects:DTIPopulationAnalysis| Population Analysis from Deformable Registration]] ==