Sidd queens at 18:33, 22 April 2009

2009-04-22T18:33:09Z

Sidd queens at 18:31, 22 April 2009

2009-04-22T18:31:45Z

Sidd queens: Created page with 'Data Collection: Done. Initial data available, hand segmented for ground truth. Segmentation: We plan to use shape-based segmentation methods for the MRI prostate data. Several...'

2009-04-22T18:30:28Z

Created page with 'Data Collection: Done. Initial data available, hand segmented for ground truth. Segmentation: We plan to use shape-based segmentation methods for the MRI prostate data. Several...'

New page

Data Collection: Done. Initial data available, hand segmented for ground truth.

Segmentation: We plan to use shape-based segmentation methods for the MRI prostate data. Several parts of the procedure have already been implemented with NA-MIC tools such as the conformal flattening procedure. Spherical wavelets for shape analysis are already available in ITK. Despeckling techniques will be used to enhance ultrasound imagery as a pre-processing step for segmentation of the prostate data.

System Implementation: Apart from the one research element (segmentation), the rest of the project is a massive software engineering effort, and will follow these major milestones and schedule:

'''Application Workflow Development:'''

10/15/2007 Define the workflow for the application (David, Csaba, Gabor) --- DONE ---

10/22/2007 Create GUI templates for the workflow steps only till Calibration step (David) --- DONE ---

11/20/2008 Wizard GUI created for Targeting step, and Verification step (Siddharth) --- DONE ---

'''Software architecture compliance of module:'''

11/20/2008 Model View Controller pattern reflected in corresponding MRML, GUI, Logic (Siddharth) ---DONE---

'''Device Modeling:'''

12/15/2007 Conversion of engineering data into VTK-viewable objects (David) -- DONE --

'''Data Display:'''

12/15/2007 Provide display logic for targets and prostate outlines (David) --- DONE ---

'''Measurement Tools:'''

07/01/2008 Semi-automatic identification of fiducials via thresholding & centroids ''still not integrated inside SLICER'' (Csaba) --- DONE ---

11/26/2008 Integration of semi-automatic identification of fiducials in the SLICER module (Siddharth) ---DONE---

07/01/2008 Logic for robot registration with fiducials ''still not integrated inside SLICER'' (Csaba) --- DONE ---

11/26/2008 Integration of Logic for robot registration with fiducials in the SLICER module --- IN PROCESS ---

08/01/2008 Prostate measurement tools (David) --- REMOVED (use automatic segmentation instead) ---

'''Biopsy Planning/Targeting:'''

07/01/2008 Calculations for robot trajectory based on target position ''still not integrated inside SLICER'' (Csaba) --- DONE ---

11/24/2008 Integration of calculations for robot trajectory based on target position (Siddharth) --- IN PROCESS ---

11/24/2008 Implement planning tools (display, logic) in Slicer3 (Siddharth, David) --- IN PROCESS ---

09/19/2008 Verification against pre-existing software and data (David, Siddharth)

'''Robot positioning:'''

09/19/2008 GUI targeting readouts for optical encoders (David, Siddharth)---- TO BE DONE----

11/10/2008 Integrate optical encoders with our Slicer module (Siddharth) -----DONE------

'''Integration of Prostate segmentation (by Yi, Tennanbaum) in SLICER module:'''

01/05/2009 - 01/09-2009 Planned integration of segmentation developed at Georgia Tech by Yi, Tennanbaum during the NAMIC project week in Utah --- PLANNED ACTIVITY ---
The current status and schedule is here: [[prostateSegmentationAHM2009|prostate segmentation AHM2009]]

'''Verification and testing of integrated system:'''

← Older revision		Revision as of 18:33, 22 April 2009
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	Back to [[DBP2:JHU\|JHU DBP 2]], [[DBP2:JHU:Roadmap\|JHU DBP Roadmap]]		Back to [[DBP2:JHU\|JHU DBP 2]], [[DBP2:JHU:Roadmap\|JHU DBP Roadmap]]
		+
		+	=== '''Current status''' ===
		+
		+	*Segmentation: Semi-automatic segmentation has been implemented by Fichtinger et al. Statistical atlas based segmentation has been prototyped by Tannenbaum et al. Pose-independent segmentation (workable in both supine/prone) is being implemented.
		+	*Registration: contour based registration has been prototyped by Fichtinger et al., needs to be re-implemented with native NA-MIC tools.
		+	*Prostate Measurement: Prototyped by Fichtinger et al., needs to be re-implemented with native NA-MIC tools.
		+	*Device Modeling: Prototyped by Fichtinger et al, needs to be re-implemented with native NA-MIC tools.
		+	*Biopsy Planning: Clinically functional, currently being implemented with native NA-MIC tools
		+	*Tutorial: Not yet started. It will be derived from the actual clinically-functional system, with demo data.
		+
		+	=== '''Schedule''' ===

	Data Collection: Done. Initial data available, hand segmented for ground truth.		Data Collection: Done. Initial data available, hand segmented for ground truth.

← Older revision		Revision as of 18:31, 22 April 2009
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		+	Back to [[DBP2:JHU\|JHU DBP 2]], [[DBP2:JHU:Roadmap\|JHU DBP Roadmap]]
		+
	Data Collection: Done. Initial data available, hand segmented for ground truth.		Data Collection: Done. Initial data available, hand segmented for ground truth.

DBP2:JHU:Roadmap:Progress - Revision history

Sidd queens at 18:33, 22 April 2009

Sidd queens at 18:31, 22 April 2009

Sidd queens: Created page with 'Data Collection: Done. Initial data available, hand segmented for ground truth. Segmentation: We plan to use shape-based segmentation methods for the MRI prostate data. Several...'