DBP2:Queens:Roadmap - Revision history

Ygao: /* Publications */

2016-11-13T22:50:51Z

Publications

Lasso: /* Tutorial */

2010-08-13T21:34:08Z

Tutorial

Lasso: Updated tutorial for Slicer 3.6

2010-08-13T21:33:38Z

Updated tutorial for Slicer 3.6

Marianna at 14:24, 14 May 2010

2010-05-14T14:24:52Z

Lasso at 21:55, 1 April 2010

2010-04-01T21:55:41Z

Lasso: /* Workflow */

2010-04-01T21:38:27Z

Workflow

Lasso: /* Workflow */

2010-04-01T21:37:58Z

Workflow

Lasso: /* Workflow */

2010-04-01T21:37:38Z

Workflow

Lasso: /* Workflow */

2010-04-01T21:36:11Z

Workflow

Lasso: /* Workflow */

2010-04-01T21:33:40Z

Workflow

@@ Line 80: / Line 80: @@
 ==Publications==
 *Lasso, A., J. Tokuda, S. Vikal, C. M. Tempany, N. Hata, and G. Fichtinger, A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support. Medical Image Computing and Computer-Assisted Intervention (MICCAI), London, UK, 2009
 *Vikal, S., S. Haker, C. Tempany, and G. Fichtinger, Prostate contouring in MRI guided biopsy", SPIE Medical Imaging, vol. 7259, 2009.

@@ Line 52: / Line 52: @@
 ==Tutorial==
 * [[Media:DBP2JohnsHopkinsTransRectalProstateBiopsy.pdf|Prostate biopsy module tutorial]]
-* [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎]]
+* [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎|Tutorial data set]]
 ==Screenshots of the Slicer-based software==

@@ Line 52: / Line 52: @@
 ==Tutorial==
 * [[Media:DBP2JohnsHopkinsTransRectalProstateBiopsy.pdf|Prostate biopsy module tutorial]]
-* [http://hdl.handle.net/1926/1619 Sample data set]
+* [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎]]
 ==Screenshots of the Slicer-based software==

@@ Line 17: / Line 17: @@
-== '''Roadmap''' ==
+==Roadmap==
 The primary goal for the roadmap is to develop an interventional module for Slicer3 for MRI-guided prostate biopsies.  This module and the accompanying tutorial will serve as a template for interventional applications with Slicer3. The module will provide the necessary functionality for calibrating the robot to the MR scanner, planning biopsies, computing the necessary robot trajectory to perform each biopsy, and verification via post-biopsy images. We will obtain a biopsy plan from multi-parametric endorectal image volumes, executable with an existing prostate biopsy device. The system will be will be implemented under Slicer3 as an interactive application.
@@ Line 28: / Line 28: @@
 </center>
-== '''Schedule''' ==
+==Schedule==
 System Implementation: Apart from the one research element (segmentation), the rest of the project is a massive software engineering effort, and will follow these major milestones and schedule:
@@ Line 47: / Line 47: @@
 * ProstateSeg module source code is available in [http://svn.na-mic.org/NAMICSandBox/trunk/Queens/ProstateSeg/ SVN]
-== '''Data''' ==
+==Data==
 * The MRI-guided needle insertion prostate MRI data sets are available at: http://hdl.handle.net/1926/1558.
-== '''Tutorial''' ==
+==Tutorial==
 * [[Media:DBP2JohnsHopkinsTransRectalProstateBiopsy.pdf|Prostate biopsy module tutorial]]
 * [http://hdl.handle.net/1926/1619 Sample data set]
-== '''Screenshots of the Slicer-based software''' ==
+==Screenshots of the Slicer-based software==
 <center>
 {|
@@ Line 70: / Line 70: @@
 </center>
-== '''Publications''' ==
+==Team and Institutes==
 *PI: Gabor Fichtinger, Queen’s University (gabor at cs.queensu.ca)
@@ Line 92: / Line 78: @@
 *NA-MIC Algorithms Contact: Allen Tannenbaum, PhD, GeorgiaTech (tannenba at ece.gatech.edu)
 *Host Institutes: Queen's University & Johns Hopkins University
 [[Category: Segmentation]] [[Category: Registration]] [[Category: Slicer]] [[Category: Prostate]]

@@ Line 20: / Line 20: @@
 The primary goal for the roadmap is to develop an interventional module for Slicer3 for MRI-guided prostate biopsies.  This module and the accompanying tutorial will serve as a template for interventional applications with Slicer3. The module will provide the necessary functionality for calibrating the robot to the MR scanner, planning biopsies, computing the necessary robot trajectory to perform each biopsy, and verification via post-biopsy images. We will obtain a biopsy plan from multi-parametric endorectal image volumes, executable with an existing prostate biopsy device. The system will be will be implemented under Slicer3 as an interactive application.
 <center>
 {|
 |valign="top"|[[Image:Menard.jpg|thumb|350px|Prostate intervention (biopsy) in closed MR scanner.]]
-|[[Image:Patient.jpg|Close-up of the transrectal procedure|thumb|420px]]
+|[[Image:Robot.jpg|thumb|400px|Transrectal prostate intervention robot assembled.]]
 |}
 </center>
-<center>
+== '''Schedule''' ==
-{|
-|valign="top"|[[Image:Robot.jpg|thumb|400px|Transrectal prostate intervention robot assembled.]]
+System Implementation: Apart from the one research element (segmentation), the rest of the project is a massive software engineering effort, and will follow these major milestones and schedule:
-|}
+*2007-10: Application Workflow Development (Define the workflow for the application; create GUI templates for Calibration step - David, Csaba, Gabor)
-</center>
+*2007-12: Device Modeling & Data Display (Conversion of engineering data into VTK-viewable objects, provide display logic for targets and prostate outlines - David)
-== '''Screenshots of the Slicer module''' ==
+== '''Screenshots of the Slicer-based software''' ==
 <center>
 {|
@@ Line 50: / Line 69: @@
 |}
 </center>
 == '''Publications''' ==

@@ Line 47: / Line 47: @@
 {|
 |valign="center"|[[Image:Calib3DView3.JPG|thumb|350px|Calibrate and register robot markers]]
-[[Image:TRPB_ProstateSegmentation.JPG|center|thumb|350px|Prostate segmentation]]
+|[[Image:TRPB_ProstateSegmentation.JPG|center|thumb|350px|Prostate segmentation]]
 |}
 </center>

@@ Line 37: / Line 37: @@
 == '''Workflow''' ==
 <center>
 {|
 |valign="center"|[[Image:TRPBTarget3DView3.JPG|thumb|350px|Targets, targeting parameters and robot coverage area display]]
 |[[Image:Calib3DViewOnly.JPG|3D view and targeting parameters display on a secondary (procedure room) monitor|thumb|300px]]
 |}
 {|
 |valign="center"|[[Image:TRPBTarget3DView5.JPG|thumb|350px|Target verification, slicer reformatted to be aligned with the planned needle trajectory]]
 |[[Image:TRPBTarget3DView7--TrajectoryCloseUp3D.JPG|Visualization of patient motion between targeting and verification image|thumb|350px]]
 |}
+{|
 [[Image:TRPB_ProstateSegmentation.JPG|center|thumb|350px|Prostate segmentation]]
+|}
 </center>