DBP2:QueensFinal:2010 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:11Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Medcomparts: /* Overview */

2011-02-01T13:25:50Z

Overview

Marianna at 18:12, 19 October 2010

2010-10-19T18:12:56Z

Marianna at 14:44, 12 October 2010

2010-10-12T14:44:44Z

Medcomparts: /* Software */

2010-10-09T14:13:44Z

Software

Medcomparts: /* Software */

2010-10-09T14:09:56Z

Software

Medcomparts: /* Listing and short description of the sample data */

2010-10-09T14:09:21Z

Listing and short description of the sample data

Medcomparts: /* Overview */

2010-10-09T14:08:16Z

Overview

Medcomparts: /* Overview */

2010-10-09T14:06:29Z

Overview

Medcomparts: /* Overview */

2010-10-09T14:05:33Z

Overview

@@ Line 4: / Line 4: @@
 =Overview=
-A 3D Slicer based end-to-end application was developed for MRI-guided prostate biopsy (implemented as a [http://www.slicer.org 3D Slicer 3.6] module, [http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav]). The application supports multiple targeting devices (transrectal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_15 15]], transperineal template, and transperineal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_17 17], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]) and multiple needle types (for biopsy and seed placement). Automatic and semi-automatic registration of the targeting device to the planning image coordinate system was implemented using 4 line fiducials or 3 orthogonal Z-shaped fiducials [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]. During the planning phase, the clinician defines several point targets for biopsy and seed placement. The 3D Slicer platform provides flexible visualization of several diagnostic image types (T2, contrast-enhanced, etc.). In the targeting phase, the software computes targeting parameters for each site that permit the targeting devices to accurately position the needles. The software offers a means to quantitatively assess the accuracy of needle placement. Patient motion during the intervention (dislocation and deformation between the planning and verification images) can be easily visualized, thereby reducing the chance of incorrect needle placement during lengthy procedures. The software is being tested in phantom experiments at three clinical sites: Brigham and Women's Hospital, NIH National Cancer Institute, and Johns Hopkins Hospital. The software also is being evaluated on patients. The targeting accuracy of the system was evaluated using 3D Slicer and the NA-MIC Kit [[{{fullurl:{{FULLPAGENAME}}}}#ref_2 2], [{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_6 6], [{{fullurl:{{FULLPAGENAME}}}}#ref_7 7]].
+A 3D Slicer based end-to-end application was developed for MRI-guided prostate biopsy (implemented as a [http://www.slicer.org 3D Slicer 3.6] module, [https://www.slicer.org/wiki/Modules:ProstateNav-Documentation-3.6 ProstateNav]). The application supports multiple targeting devices (transrectal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_15 15]], transperineal template, and transperineal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_17 17], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]) and multiple needle types (for biopsy and seed placement). Automatic and semi-automatic registration of the targeting device to the planning image coordinate system was implemented using 4 line fiducials or 3 orthogonal Z-shaped fiducials [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]. During the planning phase, the clinician defines several point targets for biopsy and seed placement. The 3D Slicer platform provides flexible visualization of several diagnostic image types (T2, contrast-enhanced, etc.). In the targeting phase, the software computes targeting parameters for each site that permit the targeting devices to accurately position the needles. The software offers a means to quantitatively assess the accuracy of needle placement. Patient motion during the intervention (dislocation and deformation between the planning and verification images) can be easily visualized, thereby reducing the chance of incorrect needle placement during lengthy procedures. The software is being tested in phantom experiments at three clinical sites: Brigham and Women's Hospital, NIH National Cancer Institute, and Johns Hopkins Hospital. The software also is being evaluated on patients. The targeting accuracy of the system was evaluated using 3D Slicer and the NA-MIC Kit [[{{fullurl:{{FULLPAGENAME}}}}#ref_2 2], [{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_6 6], [{{fullurl:{{FULLPAGENAME}}}}#ref_7 7]].
 [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16]]
@@ Line 20: / Line 20: @@
 =Software=
-*[http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav]: MRI-guided prostate biopsy module with multiple device support
+*[https://www.slicer.org/wiki/Modules:ProstateNav-Documentation-3.6 ProstateNav]: MRI-guided prostate biopsy module with multiple device support
 ** Implements a complete MRI-guided biopsy workflow: calibration, planning, targeting, verification
 ** Supports multiple devices: transrectal robot, transperineal template, transperineal robot
@@ Line 37: / Line 37: @@
 =Related pages=
 *[http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6 download]
-*[http://www.slicer.org/slicerWiki/index.php/Documentation-3.6 Slicer 3.6 documentation]
+*[https://www.slicer.org/wiki/Documentation-3.6 Slicer 3.6 documentation]
-*[http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav documentation]
+*[https://www.slicer.org/wiki/Modules:ProstateNav-Documentation-3.6 ProstateNav documentation]
 *[http://www.brighamandwomens.org/radiology/ Department of Radiology, Brigham and Women's Hospital and Harvard Medical School]
 *[http://snr.spl.harvard.edu/ Surgical Navigation and Robotics Laboratory, Image-Guided Therapy Program, Brigham and Women's Hospital and Harvard Medical School]

@@ Line 4: / Line 4: @@
 =Overview=
-A 3D Slicer based end-to-end application was developed for MRI-guided prostate biopsy (implemented as a [http://www.slicer.org 3D Slicer 3.6] module, [http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav]). The application supports multiple targeting devices (transrectal robot[[{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_15 15]], transperineal template, and transperineal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_17 17], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]) and multiple needle types (for biopsy and seed placement). Automatic and semi-automatic registration of the targeting device to the planning image coordinate system was implemented using 4 line fiducials or 3 orthogonal Z-shaped fiducials [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]. During the planning phase, the clinician defines several point targets for biopsy and seed placement. The 3D Slicer platform provides flexible visualization of several diagnostic image types (T2, contrast-enhanced, etc.). In the targeting phase, the software computes targeting parameters for each site that permit the targeting devices to accurately position the needles. The software offers a means to quantitatively assess the accuracy of needle placement. Patient motion during the intervention (dislocation and deformation between the planning and verification images) can be easily visualized, thereby reducing the chance of incorrect needle placement during lengthy procedures. The software is being tested in phantom experiments at three clinical sites: Brigham and Women's Hospital, NIH National Cancer Institute, and Johns Hopkins Hospital. The software also is being evaluated on patients. The targeting accuracy of the system was evaluated using 3D Slicer and the NA-MIC Kit [[{{fullurl:{{FULLPAGENAME}}}}#ref_2 2], [{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_6 6], [{{fullurl:{{FULLPAGENAME}}}}#ref_7 7]].
+A 3D Slicer based end-to-end application was developed for MRI-guided prostate biopsy (implemented as a [http://www.slicer.org 3D Slicer 3.6] module, [http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav]). The application supports multiple targeting devices (transrectal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_15 15]], transperineal template, and transperineal robot [[{{fullurl:{{FULLPAGENAME}}}}#ref_17 17], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]) and multiple needle types (for biopsy and seed placement). Automatic and semi-automatic registration of the targeting device to the planning image coordinate system was implemented using 4 line fiducials or 3 orthogonal Z-shaped fiducials [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18]]. During the planning phase, the clinician defines several point targets for biopsy and seed placement. The 3D Slicer platform provides flexible visualization of several diagnostic image types (T2, contrast-enhanced, etc.). In the targeting phase, the software computes targeting parameters for each site that permit the targeting devices to accurately position the needles. The software offers a means to quantitatively assess the accuracy of needle placement. Patient motion during the intervention (dislocation and deformation between the planning and verification images) can be easily visualized, thereby reducing the chance of incorrect needle placement during lengthy procedures. The software is being tested in phantom experiments at three clinical sites: Brigham and Women's Hospital, NIH National Cancer Institute, and Johns Hopkins Hospital. The software also is being evaluated on patients. The targeting accuracy of the system was evaluated using 3D Slicer and the NA-MIC Kit [[{{fullurl:{{FULLPAGENAME}}}}#ref_2 2], [{{fullurl:{{FULLPAGENAME}}}}#ref_5 5], [{{fullurl:{{FULLPAGENAME}}}}#ref_6 6], [{{fullurl:{{FULLPAGENAME}}}}#ref_7 7]].
 [[{{fullurl:{{FULLPAGENAME}}}}#ref_15 15], [{{fullurl:{{FULLPAGENAME}}}}#ref_18 18], [{{fullurl:{{FULLPAGENAME}}}}#ref_16 16]]

@@ Line 47: / Line 47: @@
 =References=
 <small>
-#<cite id="ref_1"></cite>Gao, Y., R. Sandhu, G. Fichtinger, A. Tannenbaum. "A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery", IEEE Trans Med Imaging (accepted, 05/ 27/2010)
+#<cite id="ref_1"></cite>Gao Y., Sandhu R., Fichtinger G., Tannenbaum A.R. [http://www.na-mic.org/publications/item/view/1920 A Coupled Global Registration and Segmentation Framework with Application to Magnetic Resonance Prostate Imagery.] IEEE Trans Med Imaging. 2010 Oct;29(10):1781-94. PMID: 20529727.
-#<cite id="ref_2"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger. "MRI-Guided Robotic Prostate Biopsy: A Clinical Accuracy Validation", Medical Image Computing and Computer-Assisted Intervention (MICCAI 2010), pp. 383-391, 2010.
+#<cite id="ref_2"></cite>Xu H., Lasso A., Vikal S., Guion P., Krieger A., Kaushal A., Whitcomb L.L., Fichtinger G. [http://www.na-mic.org/publications/item/view/1919 MRI-guided Robotic Prostate Biopsy: A Clinical Accuracy Validation.] Med Image Comput Comput Assist Interv. 2010;13(Pt 3):383-91. PMID: 20879423.
 #<cite id="ref_3"></cite>Tadayyon, H., A. Lasso, S. Gill, A. Kaushal, P. Guion, and G. Fichtinger. "Target Motion Compensation in MRI-guided Prostate Biopsy with Static Images", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5416-5419, 2010.
 #<cite id="ref_4"></cite>Lasso, A., S. Avni, and G. Fichtinger. "Targeting Error Simulator for Image-guided Prostate Needle Placement", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5424-5427, 2010.
 #<cite id="ref_5"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger. "MRI-Guided Transrectal Robotic Prostate Biopsy Validation", The American Association of Physicists in Medicine (AAPM) Annual Meeting 2010, July 18-22, vol. 37, 3128 (2010), Philadelphia, Pennsylvania, pp. 3128-3129, 2010.
-#<cite id="ref_6"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger. "Clinical Accuracy of Robot-Assisted Prostate Biopsy in Closed MRI Scanner", The Hamlyn Symposium on Medical Robotics, The Royal Society, London, UK, 25 May 2010, 2010.
+#<cite id="ref_6"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger. "Clinical Accuracy of Robot-Assisted Prostate Biopsy in Closed MRI Scanner", The Hamlyn Symposium on Medical Robotics, The Royal Society, London, UK, 25 May 2010.
-#<cite id="ref_7"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger. "Accuracy validation for MRI-guided robotic prostate biopsy", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762517 - 762517-8, 2010.
+#<cite id="ref_7"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger. "Accuracy validation for MRI-guided robotic prostate biopsy", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762517-762517-8, 2010.
 #<cite id="ref_8"></cite>Gao, Y., A. Tannenbaum. "Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762308-1 - 762308-9, 2010.
-#<cite id="ref_9"></cite>Tadayyon, H., G. Fichtinger, A. Lasso, S. Vikal, and S. Gill. "MRI-Guided prostate motion tracking by means of multislice-to-volume registration", SPIE Medical Imaging, 02/2010.
+#<cite id="ref_9"></cite>Tadayyon, H., G. Fichtinger, A. Lasso, S. Vikal, and S. Gill. "MRI-Guided prostate motion tracking by means of multislice-to-volume registration", Proc. SPIE,(2010); Vol. 7625, 76252V.
-#<cite id="ref_10"></cite>Lasso, A., J. Tokuda, S. Vikal, C. M. Tempany, N. Hata, and G. Fichtinger. "A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support." Medical Image Computing and Computer-Assisted Intervention (MICCAI), London, UK, 2009.
+#<cite id="ref_10"></cite>Lasso, A., J. Tokuda, S. Vikal, C. M. Tempany, N. Hata, and G. Fichtinger. "A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support." Int Conf Med Image Comput Comput Assist Interv. 2009;
-#<cite id="ref_11"></cite>Vikal, S., S. Haker, C. Tempany, and G. Fichtinger. "Prostate contouring in MRI guided biopsy", SPIE Medical Imaging, vol. 7259, 2009.
+#<cite id="ref_11"></cite>Vikal S., Haker S., Tempany C.M., Fichtinger G. [http://www.na-mic.org/publications/item/view/1597 Prostate Contouring in MRI Guided Biopsy.] Proceedings of SPIE Medical Imaging, Image Processing 2009; 7259.
 #<cite id="ref_12"></cite>Boisvert, J., D. Gobbi, S. Vikal, R. Rohling, G. Fichtinger, and P. Abolmaesumi. "An open-source solution for interactive acquisition, processing and transfer of interventional ultrasound images." Workshop on Systems and Architectures for Computer Assisted Interventions, held in conjunction with the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.
-#<cite id="ref_13"></cite>Fischer G.S., Krieger A., Iordachita I., Csoma C., Whitcomb L., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1595 MRI Compatibility of Robot Actuation Techniques - A Comparative Study.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):509-517.
+#<cite id="ref_13"></cite>Fischer G.S., Krieger A., Iordachita I., Csoma C., Whitcomb L., Fichtinger G. [http://www.na-mic.org/publications/item/view/1595 MRI Compatibility of Robot Actuation Techniques - A Comparative Study.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):509-517. PMID: 18982643.
 #<cite id="ref_14"></cite>Gill S., Abolmaesumi P., Vikal S., Mousavi P., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1598 Intraoperative Prostate Tracking with Slice-to-Volume Registration in MRI.] Proceedings of the 20th International Conference of the Society for Medical Innovation and Technology 2008; 154-158.
 #<cite id="ref_15"></cite>Krieger, A., P. Guion, C. Csoma, I. Iordachita, A. Singh, A. Kaushal, C. Menard, G. Fichtinger, and L. Whitcomb. "Design and Preliminary Clinical Studies of an MRI-Guided Transrectal Prostate Intervention System." International Society of Magnetic Resonance in Medicine (ISMRM), 2008.
-#<cite id="ref_16"></cite>Mewes P., Tokuda J., DiMaio S.P., Fischer G., Csoma C., Gobbi D., Tempany C.M., Fichtinger G., Hata N. [http://www.spl.harvard.edu/publications/item/view/1600 Integrated System for Robot-Assisted in Prostate Biopsy in Closed MRI Scanner.] Proceedings of the IEEE International Conference on Robotics and Automation 2008; 2959-2962.
+#<cite id="ref_16"></cite>Mewes P., Tokuda J., DiMaio S.P., Fischer G., Csoma C., Gobbi D., Tempany C.M., Fichtinger G., Hata N. [http://www.na-mic.org/publications/publications/item/view/1600 Integrated System for Robot-Assisted in Prostate Biopsy in Closed MRI Scanner.] Proceedings of the IEEE International Conference on Robotics and Automation 2008; 2959-2962.
 #<cite id="ref_17"></cite>Tokuda, J., S. DiMaio, G. Fischer, C. Csoma, D. Gobbi, G. Fichtinger, N. Hata, and C. Tempany. "Real-time MR Imaging Controlled by Transperineal Needle Placement Device for MRI-guided Prostate Biopsy", 16th Scientific Meeting and Exhibition of International Society of Magnetic Resonance in Medicine, 2008.
-#<cite id="ref_18"></cite>Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N. [http://www.spl.harvard.edu/publications/item/view/1477 Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.
+#<cite id="ref_18"></cite>Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N. [http://www.na-mic.org/publications/publications/item/view/1477 Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709. PMID: 18982666. PMCID: PMC2692941.
-#<cite id="ref_19"></cite>Vikal, S., S. Haker, C. Tempany, and G. Fichtinger. [http://www.spl.harvard.edu/publications/item/view/1597 Prostate contouring in MRI guided biopsy], Workshop on Prostate image analysis and computer-assisted intervention, International Conference on Medical Image Computing and Computer Assisted Intervention , 2008.
+#<cite id="ref_19"></cite>Vikal, S., S. Haker, C. Tempany, and G. Fichtinger. [http://www.na-mic.org/publications/item/view/1597 Prostate contouring in MRI guided biopsy.]Proceedings of SPIE Medical Imaging, Image Processing 2009; 7259.
 </small>

@@ Line 47: / Line 47: @@
 =References=
 <small>
-*<cite id="ref_1"></cite>[1] Gao, Y., R. Sandhu, G. Fichtinger, A. Tannenbaum, "[http://www.spl.harvard.edu/publications/item/view/1920 A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery]", IEEE Trans Med Imaging (accepted, 05/ 27/2010)
+#<cite id="ref_1"></cite>Gao, Y., R. Sandhu, G. Fichtinger, A. Tannenbaum. "A coupled global registration and segmentation framework with application to magnetic resonance prostate imagery", IEEE Trans Med Imaging (accepted, 05/ 27/2010)
-*<cite id="ref_2"></cite>[2] Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger, "[http://www.spl.harvard.edu/publications/item/view/1919 MRI-Guided Robotic Prostate Biopsy: A Clinical Accuracy Validation]", Medical Image Computing and Computer-Assisted Intervention (MICCAI 2010), pp. 383-391, 2010.
+#<cite id="ref_2"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger. "MRI-Guided Robotic Prostate Biopsy: A Clinical Accuracy Validation", Medical Image Computing and Computer-Assisted Intervention (MICCAI 2010), pp. 383-391, 2010.
-*<cite id="ref_3"></cite>[3] Tadayyon, H., A. Lasso, S. Gill, A. Kaushal, P. Guion, and G. Fichtinger, "Target Motion Compensation in MRI-guided Prostate Biopsy with Static Images", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5416-5419, 2010.
+#<cite id="ref_3"></cite>Tadayyon, H., A. Lasso, S. Gill, A. Kaushal, P. Guion, and G. Fichtinger. "Target Motion Compensation in MRI-guided Prostate Biopsy with Static Images", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5416-5419, 2010.
-*<cite id="ref_4"></cite>[4] Lasso, A., S. Avni, and G. Fichtinger, "Targeting Error Simulator for Image-guided Prostate Needle Placement", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5424-5427, 2010.
+#<cite id="ref_4"></cite>Lasso, A., S. Avni, and G. Fichtinger. "Targeting Error Simulator for Image-guided Prostate Needle Placement", EMBC2010 - 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Buenos Aires, Argentina, pp. 5424-5427, 2010.
-*<cite id="ref_5"></cite>[5] Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger, "MRI-Guided Transrectal Robotic Prostate Biopsy Validation", The American Association of Physicists in Medicine (AAPM) Annual Meeting 2010, July 18-22, vol. 37, 3128 (2010), Philadelphia, Pennsylvania, pp. 3128-3129, 2010.
+#<cite id="ref_5"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger. "MRI-Guided Transrectal Robotic Prostate Biopsy Validation", The American Association of Physicists in Medicine (AAPM) Annual Meeting 2010, July 18-22, vol. 37, 3128 (2010), Philadelphia, Pennsylvania, pp. 3128-3129, 2010.
-*<cite id="ref_6"></cite>[6] Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger, "Clinical Accuracy of Robot-Assisted Prostate Biopsy in Closed MRI Scanner", The Hamlyn Symposium on Medical Robotics, The Royal Society, London, UK, 25 May 2010, 2010.
+#<cite id="ref_6"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. Whitcomb, and G. Fichtinger. "Clinical Accuracy of Robot-Assisted Prostate Biopsy in Closed MRI Scanner", The Hamlyn Symposium on Medical Robotics, The Royal Society, London, UK, 25 May 2010, 2010.
-*<cite id="ref_7"></cite>[7] Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger, "Accuracy validation for MRI-guided robotic prostate biopsy", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762517 - 762517-8, 2010.
+#<cite id="ref_7"></cite>Xu, H., A. Lasso, S. Vikal, P. Guion, A. Krieger, A. Kaushal, L. L. Whitcomb, and G. Fichtinger. "Accuracy validation for MRI-guided robotic prostate biopsy", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762517 - 762517-8, 2010.
-*<cite id="ref_8"></cite>[8] Gao, Y., A. Tannenbaum, "Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762308-1 - 762308-9, 2010.
+#<cite id="ref_8"></cite>Gao, Y., A. Tannenbaum. "Shape based MRI prostate image segmentation using local information driven directional distance Bayesian method", Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, USA, SPIE, pp. 762308-1 - 762308-9, 2010.
-*<cite id="ref_9"></cite>[9] Tadayyon, H., G. Fichtinger, A. Lasso, S. Vikal, and S. Gill, "MRI-Guided prostate motion tracking by means of multislice-to-volume registration", SPIE Medical Imaging, 02/2010.
+#<cite id="ref_9"></cite>Tadayyon, H., G. Fichtinger, A. Lasso, S. Vikal, and S. Gill. "MRI-Guided prostate motion tracking by means of multislice-to-volume registration", SPIE Medical Imaging, 02/2010.
-*<cite id="ref_10"></cite>[10] Lasso, A., J. Tokuda, S. Vikal, C. M. Tempany, N. Hata, and G. Fichtinger, A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support. Medical Image Computing and Computer-Assisted Intervention (MICCAI), London, UK, 2009.
+#<cite id="ref_10"></cite>Lasso, A., J. Tokuda, S. Vikal, C. M. Tempany, N. Hata, and G. Fichtinger. "A generic computer assisted intervention plug-in module for 3D Slicer with multiple device support." Medical Image Computing and Computer-Assisted Intervention (MICCAI), London, UK, 2009.
-*<cite id="ref_11"></cite>[11] Vikal, S., S. Haker, C. Tempany, and G. Fichtinger, Prostate contouring in MRI guided biopsy", SPIE Medical Imaging, vol. 7259, 2009.
+#<cite id="ref_11"></cite>Vikal, S., S. Haker, C. Tempany, and G. Fichtinger. "Prostate contouring in MRI guided biopsy", SPIE Medical Imaging, vol. 7259, 2009.
-*<cite id="ref_12"></cite>[12] Boisvert, J., D. Gobbi, S. Vikal, R. Rohling, G. Fichtinger, and P. Abolmaesumi An open-source solution for interactive acquisition, processing and transfer of interventional ultrasound images. Workshop on Systems and Architectures for Computer Assisted Interventions, held in conjunction with the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.
+#<cite id="ref_12"></cite>Boisvert, J., D. Gobbi, S. Vikal, R. Rohling, G. Fichtinger, and P. Abolmaesumi. "An open-source solution for interactive acquisition, processing and transfer of interventional ultrasound images." Workshop on Systems and Architectures for Computer Assisted Interventions, held in conjunction with the 11th International Conference on Medical Image Computing and Computer Assisted Intervention, 2008.
-*<cite id="ref_13"></cite>[13] Fischer G.S., Krieger A., Iordachita I., Csoma C., Whitcomb L., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1595 MRI Compatibility of Robot Actuation Techniques - A Comparative Study.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):509-517.
+#<cite id="ref_13"></cite>Fischer G.S., Krieger A., Iordachita I., Csoma C., Whitcomb L., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1595 MRI Compatibility of Robot Actuation Techniques - A Comparative Study.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):509-517.
-*<cite id="ref_14"></cite>[14] Gill S., Abolmaesumi P., Vikal S., Mousavi P., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1598 Intraoperative Prostate Tracking with Slice-to-Volume Registration in MRI.] Proceedings of the 20th International Conference of the Society for Medical Innovation and Technology 2008; 154-158.
+#<cite id="ref_14"></cite>Gill S., Abolmaesumi P., Vikal S., Mousavi P., Fichtinger G. [http://www.spl.harvard.edu/publications/item/view/1598 Intraoperative Prostate Tracking with Slice-to-Volume Registration in MRI.] Proceedings of the 20th International Conference of the Society for Medical Innovation and Technology 2008; 154-158.
-*<cite id="ref_15"></cite>[15] Krieger, A., P. Guion, C. Csoma, I. Iordachita, A. Singh, A. Kaushal, C. Menard, G. Fichtinger, and L. Whitcomb. Design and Preliminary Clinical Studies of an MRI-Guided Transrectal Prostate Intervention System. International Society of Magnetic Resonance in Medicine (ISMRM), 2008.
+#<cite id="ref_15"></cite>Krieger, A., P. Guion, C. Csoma, I. Iordachita, A. Singh, A. Kaushal, C. Menard, G. Fichtinger, and L. Whitcomb. "Design and Preliminary Clinical Studies of an MRI-Guided Transrectal Prostate Intervention System." International Society of Magnetic Resonance in Medicine (ISMRM), 2008.
-*<cite id="ref_16"></cite>[16] Mewes P., Tokuda J., DiMaio S.P., Fischer G., Csoma C., Gobbi D., Tempany C.M., Fichtinger G., Hata N. [http://www.spl.harvard.edu/publications/item/view/1600 Integrated System for Robot-Assisted in Prostate Biopsy in Closed MRI Scanner.] Proceedings of the IEEE International Conference on Robotics and Automation 2008; 2959-2962.
+#<cite id="ref_16"></cite>Mewes P., Tokuda J., DiMaio S.P., Fischer G., Csoma C., Gobbi D., Tempany C.M., Fichtinger G., Hata N. [http://www.spl.harvard.edu/publications/item/view/1600 Integrated System for Robot-Assisted in Prostate Biopsy in Closed MRI Scanner.] Proceedings of the IEEE International Conference on Robotics and Automation 2008; 2959-2962.
-*<cite id="ref_17"></cite>[17] Tokuda, J., S. DiMaio, G. Fischer, C. Csoma, D. Gobbi, G. Fichtinger, N. Hata, and C. Tempany, "Real-time MR Imaging Controlled by Transperineal Needle Placement Device for MRI-guided Prostate Biopsy", 16th Scientific Meeting and Exhibition of International Society of Magnetic Resonance in Medicine, 2008.
+#<cite id="ref_17"></cite>Tokuda, J., S. DiMaio, G. Fischer, C. Csoma, D. Gobbi, G. Fichtinger, N. Hata, and C. Tempany. "Real-time MR Imaging Controlled by Transperineal Needle Placement Device for MRI-guided Prostate Biopsy", 16th Scientific Meeting and Exhibition of International Society of Magnetic Resonance in Medicine, 2008.
-*<cite id="ref_18"></cite>[18] Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N. [http://www.spl.harvard.edu/publications/item/view/1477 Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.
+#<cite id="ref_18"></cite>Tokuda J., Fischer G.S., Csoma C., DiMaio S.P., Gobbi D.G., Fichtinger G., Tempany C.M., Hata N. [http://www.spl.harvard.edu/publications/item/view/1477 Software Strategy for Robotic Transperineal Prostate Therapy in Closed-Bore MRI.] Int Conf Med Image Comput Comput Assist Interv. 2008;11(Pt 2):701-709.
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+#<cite id="ref_19"></cite>Vikal, S., S. Haker, C. Tempany, and G. Fichtinger. [http://www.spl.harvard.edu/publications/item/view/1597 Prostate contouring in MRI guided biopsy], Workshop on Prostate image analysis and computer-assisted intervention, International Conference on Medical Image Computing and Computer Assisted Intervention , 2008.
 </small>

@@ Line 22: / Line 22: @@
 *[http://www.slicer.org/slicerWiki/index.php/Modules:ProstateNav-Documentation-3.6 ProstateNav]: MRI-guided prostate biopsy module with multiple device support
 ** Implements a complete MRI-guided biopsy workflow: calibration, planning, targeting, verification
-** Supports multiple devices: trans-rectal robot, trans-perineal template, trans-perineal robot
+** Supports multiple devices: transrectal robot, transperineal template, transperineal robot
 ** Provides 3D visualization of patient images, targets, devices in the control and scanner room
 ** Latest stable version is available in [http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6.1 release]. Latest development version source code is available in the [http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/ProstateNav/ NA-MIC Sandbox]

@@ Line 24: / Line 24: @@
 ** Supports multiple devices: trans-rectal robot, trans-perineal template, trans-perineal robot
 ** Provides 3D visualization of patient images, targets, devices in the control and scanner room
-** Latest stable version is available in [http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6.1 release]. Latest development version source code is available in the [http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/ProstateNav/ NA-MIC Sandbox].
+** Latest stable version is available in [http://www.slicer.org/pages/Special:SlicerDownloads Slicer 3.6.1 release]. Latest development version source code is available in the [http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/ProstateNav/ NA-MIC Sandbox]
-** Tutorial: [[Media:DBP2JohnsHopkinsTransRectalProstateBiopsy.pdf | presentation]], [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎| data set]]
+** Tutorial: [[Media:DBP2JohnsHopkinsTransRectalProstateBiopsy.pdf | presentation]], [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎| dataset]]
 =Listing and short description of the sample data=

@@ Line 33: / Line 33: @@
 **Image types: Needle Ax = needle insertion confirmation image; SAG 3POINT PLAN = calibration image
 * [[Media:TransRectalProstateBiopsyTutorialDataset.zip‎| Tutorial data set]]
-**One clinical data set of robot-assisted trans-rectal prostate biopsy, contains calibration, planning, and verification images
+**One clinical dataset of robot-assisted trans-rectal prostate biopsy, contains calibration, planning, and verification images
 =Related pages=