Sbengali at 19:48, 29 July 2013

2013-07-29T19:48:03Z

Sbengali at 19:37, 29 July 2013

2013-07-29T19:37:36Z

Sbengali: Added documentation for module

2013-07-29T19:11:34Z

Added documentation for module

New page

__NOTOC__
===CARMA Inhomogeneity Correction Filter===

{|
|[[Image:CMRToolkitWizard_1.png|thumb|280px|Choose image panel]]
|[[Image:CMRToolkitWizard_2.png|thumb|280px|Segmentation panel]]
|[[Image:CMRToolkitWizard_3.png|thumb|280px|Axial Dilate Module panel]]
|}

==Authors, Collaborators & Contact==
* CARMA Center, University of Utah: Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod

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==General Information==
===Module Type & Category===

Type: CLI

Category: Cardiac MRI Toolkit

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==Module Description==
This wizard module takes the user through the steps involved in analyzing a cardiac LGE-MRI image for scar enhancement. The wizard uses modules from the Cardiac MRI Toolkit extension as well as core Slicer modules. Test data or other data can be used to run the wizard.

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== Usage ==

===Examples, Use Cases & Tutorials===

* This module is meant to be used for cardiac LGE-MRI scans.

===Quick Tour of Features and Use===

The following are the steps to use the module:

1. Select the input cardiac MRI image.<br>
2. Manually segment the left atrial (LA) endocardium region.<br>
3. Axially dilate the endocardium segmentation to obtain the epicardium region.<br>
4. Subtract the endocardium segmentation from the epicardium segmentation to obtain the wall region.<br>
5. Remove the pulmonary veins (PVs) from the wall segmentation.<br>
6. Cut off the PVs from the endocardium segmentation created in step 2.<br>
7. Create the isosurface of the endocardium segmentation without the PVs.<br>
8. Run the automatic scar module to view regions of scar enhancement in the MRI. Create the isosurface of the scar to view it overlaid on the endocardium isosurface.

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== Development ==

===Source Code & Documentation===

The source code for this module can be found at the [https://github.com/carma-center/carma_slicer_extension/ GitHub repository].

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 __NOTOC__
-===Cardiac MRI Toolkit Wizard===
+===CMR Toolkit Wizard===
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DBP3:Utah:SlicerModuleCMRToolkitWizard - Revision history

Sbengali at 19:48, 29 July 2013

Sbengali at 19:37, 29 July 2013

Sbengali: Added documentation for module