DBP3:Utah:SlicerModuleCardiacRegistrationBRAINSFit - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:26Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Sbengali at 19:54, 29 July 2013

2013-07-29T19:54:46Z

Sbengali at 18:57, 29 July 2013

2013-07-29T18:57:09Z

Sbengali: /* More Information */

2013-01-30T22:20:08Z

More Information

Sbengali: /* More Information */

2012-12-13T18:05:01Z

More Information

Sbengali: /* Development */

2012-12-13T18:04:53Z

Development

Sbengali: /* Usage */

2012-11-20T23:02:12Z

Usage

Sbengali: Created new page for CARMA BRAINSFit module

2012-11-20T20:05:08Z

Created new page for CARMA BRAINSFit module

New page

__NOTOC__
===CARMA Cardiac MRI Registration Using BRAINSFit===

{|
|[[Image:Slicer_Carma_BrainsFit_Screenshot.jpg|thumb|280px|(L to R) Registered image, fixed image, and moving image]]
|}

==Authors, Collaborators & Contact==
* CARMA Center, University of Utah: Salma Bengali, Alan Morris, Greg Gardner, Josh Cates, Rob MacLeod

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==General Information==
===Module Type & Category===

Type: CLI

Category: CARMA

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==Module Description==
This module implements case-specific registration using BRAINSFit for cardiac LGE-MRI, MRA and CT images acquired at different time points or across different patients. The types of registration scenarios are described [[DBP3:Utah:RegCases|here]]. The inputs to this module are two image volumes: image volume one is the fixed volume, and image volume two is the moving volume. The user selects the imaging modalities based on the types of input image volumes. Registration parameters are tuned for the registration cases. Input image volumes that are cropped to the area around the left atrium can also be used to improve the final registration result. Advanced registration parameters can be changed to check if the registration result shows improvement.

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== Usage ==

===Examples, Use Cases & Tutorials===
[[Media:Carma_BrainsFit_Registration_Tutorial.pptx|CARMA Registration Using BRAINSFit Tutorial]]

The image volumes in this dataset: [http://hdl.handle.net/1926/1765 CARMA Registration Tutorial Data] can be used as inputs to the module. The dataset contains anonymized LGE-MRI, MRA and CT images.

===Quick Tour of Features and Use===

The following are the inputs and outputs:

* Image Volume One (Fixed): Select the LGE-MRI, MRA or CT Image
* Image Volume Two (Moving): Select the LGE-MRI or MRA image
* Output Image Volume: The registration result
* Imaging modality: The types of image volumes that are being registered (e.g LGE-MRI, MRA, CT, Acute Scar)

===Advanced Registration Parameters===
The advanced registration parameters are:
* Initialization Type
* Registration Type
* Maximum Number of Iterations
* Number of Samples
* Minimum Step Length
* Transform Scale
* Reproportion Scale
* Skew Scale
* Interpolation Type
* Metric Type
The details about the advanced registration parameters can be found at http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit.

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== Development ==

===Known bugs===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker.

===Usability issues===

Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker. Please select the '''usability issue category''' when browsing or contributing.

===Source code & documentation===

Customize following [http://www.na-mic.org/ViewVC/index.cgi/ links] for your module.

[http://www.na-mic.org/Slicer/Documentation/Slicer3/html/ Links] to documentation generated by Doxygen.
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== More Information ==

===Acknowledgment===
Include funding and other support here.

===References===
Publications related to this module go here. Links to pdfs would be useful.

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← Older revision		Revision as of 22:20, 30 January 2013
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−	~~== More Information ==~~
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−	~~</div>~~
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 * Interpolation Type
 * Metric Type
-The details about the advanced registration parameters can be found at http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit.
+The details about the advanced registration parameters can be found at https://www.slicer.org/wiki/Modules:BRAINSFit.
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 __NOTOC__
-===CARMA Cardiac MRI Registration Using BRAINSFit===
+===CMR Toolkit Cardiac MRI Registration Using BRAINSFit===
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 Type: CLI
-Category: CARMA
+Category: Cardiac MRI Toolkit
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 == More Information ==
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 == Development ==
-===Known bugs===
+===Source Code & Documentation===
-Follow this [http://na-mic.org/Mantis/main_page.php link] to the Slicer bug tracker.
+The source code for this module can be found at the [https://github.com/carma-center/carma_slicer_extension/ GitHub repository].
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 ===Examples, Use Cases & Tutorials===
-[[Media:Carma_BrainsFit_Registration_Tutorial.pptx|CARMA Registration Using BRAINSFit Tutorial]]
+* [[Media:Carma_BrainsFit_Registration_Tutorial.pptx|CARMA Registration Using BRAINSFit Tutorial]]
-The image volumes in this dataset: [http://hdl.handle.net/1926/1765 CARMA Registration Tutorial Data] can be used as inputs to the module. The dataset contains anonymized LGE-MRI, MRA and CT images.
+* The image volumes in this dataset: [http://hdl.handle.net/1926/1765 CARMA Registration Tutorial Data] can be used as inputs to the module. The dataset contains anonymized LGE-MRI, MRA and CT images.
 ===Quick Tour of Features and Use===