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DTI Tractography Challenge MICCAI2011 Submission Format - Revision history
2026-04-18T01:42:23Z
Revision history for this page on the wiki
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https://www.na-mic.org/w/index.php?title=DTI_Tractography_Challenge_MICCAI2011_Submission_Format&diff=67890&oldid=prev
Spujol: /* File format and naming convention for submission */
2011-06-09T01:39:54Z
<p><span dir="auto"><span class="autocomment">File format and naming convention for submission</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 01:39, 9 June 2011</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''All results (Nrrd and vtk files) should be in the original DWI image space'''.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>'''All results (Nrrd and vtk files) should be in the original DWI image space'''.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>An example of the naming convention to be used for <del class="diffchange diffchange-inline">Patient1 </del>and <del class="diffchange diffchange-inline">HealthySubject1 </del>is given below:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>An example of the naming convention to be used for <ins class="diffchange diffchange-inline">patient1 </ins>and <ins class="diffchange diffchange-inline">healthy subject1 </ins>is given below:</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Patient1: </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*Patient1: </div></td></tr>
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Spujol
https://www.na-mic.org/w/index.php?title=DTI_Tractography_Challenge_MICCAI2011_Submission_Format&diff=67889&oldid=prev
Spujol at 01:38, 9 June 2011
2011-06-09T01:38:35Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 01:38, 9 June 2011</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>...<br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>...<br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">healthysubject1_scan1_right_enveloppe</del>.nhdr <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_right_enveloppe</ins>.nhdr <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">healthysubject1_scan1_right_enveloppe</del>.raw <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_right_enveloppe</ins>.raw <br></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>healthysubject1_scan1_left_tract_axial_view.png <br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>healthysubject1_scan1_left_tract_axial_view.png <br></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">healthysubject1_scan1_left_tract_coronal_view.png <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">healthysubject1_scan1_left_tract_sagittal_view.png <br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">healthysubject1_scan1_right_tract_axial_view.png <br></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>healthysubject1_scan1_right_tract_coronal_view.png <br></div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>healthysubject1_scan1_right_tract_coronal_view.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_left_tract_sagittal_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan1_right_tract_sagittal_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_right_tract_axial_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">...<br></ins></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_right_tract_coronal_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_left_tract_axial_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_right_tract_sagittal_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_left_tract_coronal_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_left_tract_sagittal_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_left_and_right_tract_axial_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_right_tract_axial_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_left_and_right_tract_coronal_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_right_tract_coronal_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">patient1_left_and_right_tract_sagittal_view</del>.png <br></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">healthysubject1_scan10_right_tract_sagittal_view</ins>.png <br></div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Back to [[Events:_DTI_Tractography_Challenge_MICCAI_2011 | DTI Tractography Challenge MICCAI 2011]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Back to [[Events:_DTI_Tractography_Challenge_MICCAI_2011 | DTI Tractography Challenge MICCAI 2011]]</div></td></tr>
</table>
Spujol
https://www.na-mic.org/w/index.php?title=DTI_Tractography_Challenge_MICCAI2011_Submission_Format&diff=67884&oldid=prev
Spujol: Created page with '=='''File format and naming convention for submission'''== The results should be sent in a zip archive or tarball file named ''''miccai2011DTIChallenge_firstAuthorName.zip''''. …'
2011-06-08T23:47:44Z
<p>Created page with '=='''File format and naming convention for submission'''== The results should be sent in a zip archive or tarball file named ''''miccai2011DTIChallenge_firstAuthorName.zip''''. …'</p>
<p><b>New page</b></p><div>=='''File format and naming convention for submission'''==<br />
<br />
The results should be sent in a zip archive or tarball file named ''''miccai2011DTIChallenge_firstAuthorName.zip''''.<br />
For each case, the results should be submitted in the following formats: 1) 3D coordinate of the tracts: vtkPolydata ASCII VTK file format; 2) enveloppe of the tracts (voxelized binary image of the tracts): ITK-readable Nrrd file format 3) anatomical views (axial, coronal, sagittal) of individual and paired corticospinal tracts with a black background, in png file format, 4) a set of intuitive neurosurgical views in png file format.<br />
<br />
'''All results (Nrrd and vtk files) should be in the original DWI image space'''.<br />
<br />
An example of the naming convention to be used for Patient1 and HealthySubject1 is given below:<br />
<br />
*Patient1: <br />
patient1_left_tract.vtk <br><br />
patient1_right_tract.vtk <br><br />
patient1_left_enveloppe.nhdr <br><br />
patient1_left_enveloppe.raw <br><br />
patient1_right_enveloppe.nhdr <br><br />
patient1_right_enveloppe.raw <br><br />
<br />
patient1_left_tract_axial_view.png <br><br />
patient1_left_tract_coronal_view.png <br><br />
patient1_left_tract_sagittal_view.png <br><br />
patient1_right_tract_axial_view.png <br><br />
patient1_right_tract_coronal_view.png <br><br />
patient1_right_tract_sagittal_view.png <br><br />
<br />
patient1_left_and_right_tract_axial_view.png <br><br />
patient1_left_and_right_tract_coronal_view.png <br><br />
patient1_left_and_right_tract_sagittal_view.png <br><br />
<br />
patient1_neurosurgicalview1.png<br><br />
<br><br />
patient1_neurosurgicalviewN.png<br><br />
<br />
*Healthy subject1<br />
healthysubject1_scan1_left_tract.vtk <br><br />
healthysubject1_scan1_right_tract.vtk<br><br />
...<br><br />
healthysubject1_scan10_left_tract.vtk <br><br />
healthysubject1_scan10_right_tract.vtk<br><br />
healthysubject1_scan1_left_enveloppe.nhdr <br><br />
healthysubject1_scan1_left_enveloppe.raw <br><br />
...<br><br />
healthysubject1_scan10_left_enveloppe.nhdr<br><br />
healthysubject1_scan10_left_enveloppe.raw <br><br />
healthysubject1_scan1_right_enveloppe.nhdr <br><br />
healthysubject1_scan1_right_enveloppe.raw <br><br />
...<br><br />
healthysubject1_scan1_right_enveloppe.nhdr <br><br />
healthysubject1_scan1_right_enveloppe.raw <br><br />
<br />
healthysubject1_scan1_left_tract_axial_view.png <br><br />
healthysubject1_scan1_right_tract_coronal_view.png <br><br />
patient1_left_tract_sagittal_view.png <br><br />
patient1_right_tract_axial_view.png <br><br />
patient1_right_tract_coronal_view.png <br><br />
patient1_right_tract_sagittal_view.png <br><br />
<br />
patient1_left_and_right_tract_axial_view.png <br><br />
patient1_left_and_right_tract_coronal_view.png <br><br />
patient1_left_and_right_tract_sagittal_view.png <br><br />
<br />
<br />
<br />
Back to [[Events:_DTI_Tractography_Challenge_MICCAI_2011 | DTI Tractography Challenge MICCAI 2011]]</div>
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