EMSegment - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:41:09Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2009-06-26T01:05:14Z

Key Investigators

2009-06-26T00:28:29Z

Global Prior Visualization

2009-06-26T00:28:15Z

Intensity Distribution Visualization

2009-06-26T00:28:02Z

Intensity Normalization

2009-06-26T00:25:36Z

Collaboration: Progress update at the end of NA-MIC Programming Week

2009-06-22T01:58:10Z

2009-06-20T21:11:08Z

Key Investigators: add collaborator

2009-06-17T15:09:36Z

Key Investigators

2009-06-17T01:47:08Z

@@ Line 43: / Line 43: @@
 Our development has been committed into the Slicer3 trunk and will be available in Slicer 3.5.
-As a side project, we developed a module for MRI Bias Field Correction: [http://www.slicer.org/slicerWiki/index.php/Modules:MRIBiasFieldCorrection-Documentation-3.5 MRIBiasFieldCorrection]
+As a side project, we developed a module for MRI Bias Field Correction: [https://www.slicer.org/wiki/Modules:MRIBiasFieldCorrection-Documentation-3.5 MRIBiasFieldCorrection]
 We provided support to the NA-MIC group studying alcohol and stress interaction in primates,
 and we have tested the module on monkey datasets.

@@ Line 10: / Line 10: @@
 * Koen Van Leemput (Harvard Medical School, Massachusetts General Hospital)
 <div style="margin: 20px;">
@@ Line 32: / Line 35: @@
 <h3>Progress</h3>
-The EMSegment module is under active development and will be available in Slicer 3.5.
+We developed 3 new features to improve the visualization of parameters in the EMSegment
-A first achievement of this project is the completion of a Slicer3 module for MRI Bias Field Correction.
+and to help the user select the optimum values:
-The [http://www.slicer.org/slicerWiki/index.php/Modules:MRIBiasFieldCorrection-Documentation-3.5 MRIBiasFieldCorrection]
-module is currently tested for the study of alcohol and stress interaction in primates.
+* Intensity Normalization
 </div>

@@ Line 55: / Line 55: @@
 We compute the Global Priors based on the selection in the intensity histogram.
-[[File:EMSegment_Global_Prior_Visualization.png]]
+[[File:EMSegment_Global_Prior_Visualization.png|600px]]
 ==Collaboration==

@@ Line 50: / Line 50: @@
 We model the image intensities using a Gaussian distribution for every class.
-[[File:EMSegment_Gaussian_2D.png]]
+[[File:EMSegment_Gaussian_2D.png|600px]]
 ===Global Prior Visualization===
 We compute the Global Priors based on the selection in the intensity histogram.

@@ Line 45: / Line 45: @@
 We compute the normalization parameter for the atlas based on the value selected by the user.
-[[File:EMSegment_Intensity_Normalization.png]]
+[[File:EMSegment_Intensity_Normalization.png|600px]]
 ===Intensity Distribution Visualization===
 We model the image intensities using a Gaussian distribution for every class.

@@ Line 40: / Line 40: @@
 </div>
 <div style="width: 97%; float: left; padding-right: 3%;">
 ==Collaboration==

@@ Line 1: / Line 1: @@
 __NOTOC__
 <gallery>
-Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
+Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Projects List]]
 </gallery>

@@ Line 6: / Line 6: @@
 ==Key Investigators==
-* Sylvain Jaume, Koen Van Leemput, Polina Golland (MIT Computer Science and Artificial Intelligence Laboratory)
+* Sylvain Jaume, Polina Golland (MIT Computer Science and Artificial Intelligence Laboratory)
 * Nicolas Rannou, Steve Pieper, Ron Kikinis (Harvard Medical School, Brigham and Women's Hospital)
@@ Line 15: / Line 16: @@
 <h3>Objective</h3>
 The goal of the EMSegment project is to create a segmentation module in Slicer3 that offers a high productivity and reliability to the clinician.
-The targetted application is the segmentation of MRI images of the brain. The EMSegment module allows the segmentation of other anatomical
+The targeted application is the segmentation of MRI images of the brain. The EMSegment module allows the segmentation of other anatomical
 regions as long as a statistical atlas is available.

← Older revision		Revision as of 01:47, 17 June 2009
Line 1:		Line 1:
		+	__NOTOC__
		+	<gallery>
		+	Image:PW2009-v3.png\|[[2009_Summer_Project_Week\|Project Week Main Page]]
		+
		+	</gallery>
		+
	==Key Investigators==		==Key Investigators==
	* Sylvain Jaume, Polina Golland (MIT Computer Science and Artificial Intelligence Laboratory)		* Sylvain Jaume, Polina Golland (MIT Computer Science and Artificial Intelligence Laboratory)