EM Segment - Revision history

Sylvainjaume: Replaced content with 'Visit the [http://www.na-mic.org/Wiki/index.php/EMSegment EMSegment] module for Slicer3.'

2009-06-07T01:26:51Z

Replaced content with 'Visit the [http://www.na-mic.org/Wiki/index.php/EMSegment EMSegment] module for Slicer3.'

Sylvainjaume: /* Collaboration */

2009-06-05T20:56:34Z

Collaboration

Sylvainjaume: Created page with '==Key Investigators== * Sylvain Jaume, MIT * Nicolas Rannou, BWH * Koen Van Leemput, MGH * Polina Golland, MIT * Steve Pieper, BWH * Ron Kikinis, BWH
...'

2009-06-05T20:50:29Z

Created page with '==Key Investigators== * Sylvain Jaume, MIT * Nicolas Rannou, BWH * Koen Van Leemput, MGH * Polina Golland, MIT * Steve Pieper, BWH * Ron Kikinis, BWH <div style="margin: 20px;">...'

New page

==Key Investigators==
* Sylvain Jaume, MIT
* Nicolas Rannou, BWH
* Koen Van Leemput, MGH
* Polina Golland, MIT
* Steve Pieper, BWH
* Ron Kikinis, BWH

<div style="margin: 20px;">
<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
The goal of this project is to create a segmentation module in Slicer3 that offers a high productivity and reliability to the clinician.
The primary application is the segmentation of MRI images using a probabilistic atlas.

</div>

<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>
Our algorithm builds upon the Expectation Maximization theory and is structured to let the clinician make the most efficient use of his/her anatomical knowledge.
Because of our intuitive visualization of probabilities, the user can understand the probabilistic features of his/her data and can efficiently tune the parameters to obtain the most accurate segmentation.
To meet the time constraints of the tasks in a hospital, a main focus has been devoted to the acceleration of the EM segmentation algorithm.
</div>

<div style="width: 40%; float: left;">

<h3>Progress</h3>
A Slicer3 module for MRI Bias Field Correction has been developed to serve as a pre-processing step for the EM segmentation and is currently tested by collaborators who study alcohol and stress interaction in primates.

</div>
</div>

==Collaboration==
* [http://www.na-mic.org/Wiki/index.php/Projects:BayesianMRSegmentation Bayesian Segmentation of MRI Images] by Koen Van Leemput, Sylvain Jaume, Polina Golland, Steve Pieper, and Ron Kikinis.
* [http://www.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction:Measuring_Alcohol_and_Stress_Interaction NA-MIC NCBC Collaboration: Measuring Alcohol and Stress Interaction] by Vidya Rajagopalan, Andriy Fedorov and Chris Wyatt.

← Older revision		Revision as of 01:26, 7 June 2009
Line 1:		Line 1:
−	~~==Key Investigators==~~	+	Visit the [http://www.na-mic.org/Wiki/index.php/EMSegment EMSegment] module for Slicer3.
−	* Sylvain Jaume, MIT
−	* Nicolas Rannou, BWH
−	* Koen Van Leemput, MGH
−	* Polina Golland, MIT
−	* Steve Pieper, BWH
−	* Ron Kikinis, BWH
−
−	~~<div style="margin: 20px;">~~
−	~~<div style="width: 27%; float: left; padding-right: 3%;">~~
−
−	~~<h3>Objective</h3>~~
−	~~The goal of this project is to create a segmentation module in Slicer3 that offers a high productivity and reliability to~~ the ~~clinician.~~
−	~~The primary application is the segmentation of MRI images using a probabilistic atlas.~~
−
−	~~</div>~~
−
−	~~<div style="width: 27%; float: left; padding-right: 3%;">~~
−
−	~~<h3>Approach, Plan</h3>~~
−	~~Our algorithm builds upon the Expectation Maximization theory and is structured to let the clinician make the most efficient use of his/her anatomical knowledge.~~
−	Because of our intuitive visualization of probabilities, the user can understand the probabilistic features of his/her data and can efficiently tune the parameters to obtain the most accurate segmentation.
−	~~To meet the time constraints of the tasks in a hospital, a main focus has been devoted to the acceleration of the EM segmentation algorithm.~~
−	~~</div>~~
−
−	~~<div style="width: 40%; float: left;">~~
−
−	~~<h3>Progress</h3>~~
−	A Slicer3 module for MRI Bias Field Correction has been developed to serve as a pre-processing step for the EM segmentation and is currently tested by collaborators who study alcohol and stress interaction in primates.
−
−	~~</div>~~
−	~~</div>~~
−
−	~~==Collaboration==~~
−	* [http://www.na-mic.org/Wiki/index.php/~~Projects:BayesianMRSegmentation Bayesian Segmentation of MRI Images~~] ~~by Koen Van Leemput, Sylvain Jaume, Polina Golland, Steve Pieper, and Ron Kikinis.~~
−	* [http://www.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction NA-MIC NCBC Collaboration: Measuring Alcohol and Stress Interaction] by Vidya Rajagopalan, Andriy Fedorov and Chris Wyatt.

@@ Line 34: / Line 34: @@
 ==Collaboration==
 * [http://www.na-mic.org/Wiki/index.php/Projects:BayesianMRSegmentation Bayesian Segmentation of MRI Images] by Koen Van Leemput, Sylvain Jaume, Polina Golland, Steve Pieper, and Ron Kikinis.
-* [http://www.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction:Measuring_Alcohol_and_Stress_Interaction NA-MIC NCBC Collaboration: Measuring Alcohol and Stress Interaction] by Vidya Rajagopalan, Andriy Fedorov and Chris Wyatt.
+* [http://www.na-mic.org/Wiki/index.php/Measuring_Alcohol_Stress_Interaction NA-MIC NCBC Collaboration: Measuring Alcohol and Stress Interaction] by Vidya Rajagopalan, Andriy Fedorov and Chris Wyatt.

EM Segment - Revision history

Sylvainjaume: Replaced content with 'Visit the [http://www.na-mic.org/Wiki/index.php/EMSegment EMSegment] module for Slicer3.'

Sylvainjaume: /* Collaboration */

Sylvainjaume: Created page with '==Key Investigators== * Sylvain Jaume, MIT * Nicolas Rannou, BWH * Koen Van Leemput, MGH * Polina Golland, MIT * Steve Pieper, BWH * Ron Kikinis, BWH ...'

Sylvainjaume: Created page with '==Key Investigators== * Sylvain Jaume, MIT * Nicolas Rannou, BWH * Koen Van Leemput, MGH * Polina Golland, MIT * Steve Pieper, BWH * Ron Kikinis, BWH
...'